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SCNpilot_expt_500_bf_scaffold_2749

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2749_1
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(156..536)
DNA (381bp) protein (127aa)
Activator of HSP90 ATPase 1 family protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQK6_NIAKG
activator of HSP90 ATPase 1 family protein
Activator of HSP90 ATPase 1 family protein {ECO:0000313|EMBL:AEW03253.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_500_bf_scaffold_2749_2
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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769..1641
DNA (873bp) protein (291aa)
RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PQD5_CHIPD
RpoD subfamily RNA polymerase sigma-70 subunit; K03086 RNA polymerase primary sigma factor
RNA polymerase, sigma 70 subunit, RpoD subfamily {ECO:0000313|EMBL:ACU58824.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_500_bf_scaffold_2749_3
unknown

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1734..2090
DNA (357bp) protein (119aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2749_4
unknown

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comp(1967..2233)
DNA (267bp) protein (89aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2749_5
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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2383..3114
DNA (732bp) protein (244aa)
lipoate-protein ligase B; K03801 lipoyl(octanoyl) transferase [EC:2.3.1.181]
Octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262}; EC=2.3.1.181 {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262};; Lipoate-protein ligase B {ECO:0000256|HAMAP-Rule:MF_00013}; Lipoyl/octanoyl transferase {ECO:0000256|HAMAP-Rule:MF_00013}; Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source=
Octanoyltransferase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PB36_CHIPD
SCNpilot_expt_500_bf_scaffold_2749_6
Cyclobacterium marinum, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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3074..3601
DNA (528bp) protein (176aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; K00950 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
2-amino-4-hydroxy-6-hydroxymethyldihydropteridin epyrophosphokinase n=1 Tax=Cyclobacterium marinum (strain ATCC 25205 / DSM 745) RepID=G0J4L6_CYCMS
2-amino-4-hydroxy-6-hydroxymethyldihydropteridin epyrophosphokinase {ECO:0000313|EMBL:AEL24681.1}; TaxID=880070 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium marinum (strain ATCC 25205 / DSM 745) (Flectobacillus; marinus).;"
SCNpilot_expt_500_bf_scaffold_2749_7
Draconibacterium orientale, Draconibacterium, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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3651..5969
DNA (2319bp) protein (773aa)
Uncharacterized protein {ECO:0000313|EMBL:AHW61855.1}; TaxID=1168034 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prolixibacteraceae; Draconibacterium.;" source="Draconibacterium orientale.;"
Putative uncharacterized protein id=3761757 bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2749_8
Draconibacterium orientale, Draconibacterium, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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5978..8293
DNA (2316bp) protein (772aa)
Uncharacterized protein {ECO:0000313|EMBL:AHW61855.1}; TaxID=1168034 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prolixibacteraceae; Draconibacterium.;" source="Draconibacterium orientale.;"
Putative uncharacterized protein id=2699152 bin=GWF2_Bacteroidetes_42_66 species=Haliscomenobacter hydrossis genus=Haliscomenobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_42_66 organism_group=Bacteroidetes organism_desc=a73
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2749_9
Hymenobacter swuensis, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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8378..9091
DNA (714bp) protein (238aa)
Glycosyl transferase family 2 n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KPY0_HALH1
Uncharacterized protein {ECO:0000313|EMBL:AHJ95698.1}; TaxID=1227739 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter swuensis DY53.;"
family 2 glycosyl transferase
SCNpilot_expt_500_bf_scaffold_2749_10
Hymenobacter sp. DG25B, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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9379..11517
DNA (2139bp) protein (713aa)
Uncharacterized protein {ECO:0000313|EMBL:AIZ62854.1}; TaxID=1385664 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter sp. DG25B.;"
Putative uncharacterized protein id=3761757 bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2749_11
Chryseobacterium sp. JM1, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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11533..12198
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000370FC94
Iron (Metal) dependent repressor, dtxr family protein {ECO:0000313|EMBL:KFF20014.1}; TaxID=1233950 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. JM1.;"
Mn-dependent transcriptional regulator
SCNpilot_expt_500_bf_scaffold_2749_12
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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12282..12791
DNA (510bp) protein (170aa)
Regulatory protein MarR n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C3W1_SPHS2
regulatory protein MarR
Regulatory protein MarR {ECO:0000313|EMBL:ADZ79571.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
SCNpilot_expt_500_bf_scaffold_2749_13
Pedobacter sp. BAL39, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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12810..14111
DNA (1302bp) protein (434aa)
Outer membrane efflux protein/ immunoreative antigen n=1 Tax=Pedobacter sp. BAL39 RepID=A6EH81_9SPHI rbh
Outer membrane efflux protein/ immunoreative antigen {ECO:0000313|EMBL:EDM35162.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;"
outer membrane efflux protein rbh
SCNpilot_expt_500_bf_scaffold_2749_14
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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14151..15221
DNA (1071bp) protein (357aa)
RND transporter n=1 Tax=Rudanella lutea RepID=UPI0003828B9D rbh
RND transporter {ECO:0000313|EMBL:AKD54824.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_2749_15
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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15265..18417
DNA (3153bp) protein (1051aa)
acriflavin resistance protein n=1 Tax=Dyadobacter beijingensis RepID=UPI000377136A rbh
Nodulation protein nolG {ECO:0000313|EMBL:CCH52564.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
acriflavin resistance protein; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family rbh
SCNpilot_expt_500_bf_scaffold_2749_16
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18485..19174
DNA (690bp) protein (230aa)
silent information regulator protein Sir2; K12410 NAD-dependent deacetylase [EC:3.5.1.-]
Silent information regulator protein Sir2 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PUW8_CHIPD
Silent information regulator protein Sir2 {ECO:0000313|EMBL:ACU62877.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_500_bf_scaffold_2749_17
Bizionia argentinensis, Bizionia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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19528..20682
DNA (1155bp) protein (385aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI000365FB5C
Uncharacterized protein {ECO:0000313|EMBL:EGV44538.1}; TaxID=1046627 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Bizionia.;" source="Bizionia argentinensis JUB59.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2749_18
Algibacter lectus, Algibacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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20735..21742
DNA (1008bp) protein (336aa)
hypothetical protein n=1 Tax=Leucothrix mucor RepID=UPI0003B4461A rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:GAL62873.1}; TaxID=221126 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Algibacter.;" source="Algibacter lectus.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_2749_19
unknown

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comp(21745..21927)
DNA (183bp) protein (61aa)

This feature has no annotations

Displaying 19 items

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