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SCNpilot_expt_500_bf_scaffold_565

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_565_1
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..749)
DNA (747bp) protein (249aa)
Transcriptional regulator, IclR family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V8S1_9BRAD rbh
Transcriptional regulator, IclR family {ECO:0000313|EMBL:EFI50559.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
IclR family transcriptional regulator rbh
SCNpilot_expt_500_bf_scaffold_565_2
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1038..1772)
DNA (735bp) protein (245aa)
2-haloalkanoic acid dehalogenase; K01560 2-haloacid dehalogenase [EC:3.8.1.2]
Haloacid dehalogenase, type II n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P3A6_9BRAD
Haloacid dehalogenase, type II {ECO:0000313|EMBL:EKS37062.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_500_bf_scaffold_565_3
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1846..2052)
DNA (207bp) protein (69aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YKM8_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAR55527.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
SCNpilot_expt_500_bf_scaffold_565_4
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2098..2397)
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PIJ6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42472.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
histone family protein DNA-binding protein
SCNpilot_expt_500_bf_scaffold_565_5
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2636..5083)
DNA (2448bp) protein (816aa)
Pyruvate dehydrogenase E1 component {ECO:0000256|PIRNR:PIRNR000156}; EC=1.2.4.1 {ECO:0000256|PIRNR:PIRNR000156};; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
pyruvate dehydrogenase alpha subunit; K00163 pyruvate dehydrogenase E1 component [EC:1.2.4.1] rbh
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NZL3_9BRAD rbh
SCNpilot_expt_500_bf_scaffold_565_6
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5218..5691
DNA (474bp) protein (158aa)
Transcriptional regulator, AsnC family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V8G1_9BRAD
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:EFI50846.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
transcriptional regulator
SCNpilot_expt_500_bf_scaffold_565_7
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5849..6448)
DNA (600bp) protein (200aa)
NAD(P)H dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_01017, ECO:0000256|SAAS:SAAS00064138}; EC=1.6.5.2 {ECO:0000256|HAMAP-Rule:MF_01017, ECO:0000256|SAAS:SAAS00064138};; NAD(P)H:quinone oxidoreductase {ECO:0000256|HAMAP-Rule:MF_01017}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
wrbA; NAD(P)H:quinone oxidoreductase, type IV (EC:1.6.5.2); K03809 Trp repressor binding protein rbh
NAD(P)H dehydrogenase (quinone) n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P3B3_9BRAD rbh
SCNpilot_expt_500_bf_scaffold_565_8
unknown

Not on your lists

comp(6515..6649)
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_565_9
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6646..7344)
DNA (699bp) protein (233aa)
Pirin-like protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P6E7_9BRAD
Pirin-like protein {ECO:0000313|EMBL:EKS37066.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
pirin; K06911
SCNpilot_expt_500_bf_scaffold_565_10
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7507..8421
DNA (915bp) protein (305aa)
Transcriptional regulator, LysR family n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QG31_9BRAD
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EGP09973.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
putative transcriptional regulatory protein LysR family
SCNpilot_expt_500_bf_scaffold_565_11
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8442..9572)
DNA (1131bp) protein (377aa)
Mandelate racemase/muconate lactonizing enzyme n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12G44_POLSJ rbh
mandelate racemase/muconate lactonizing protein rbh
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
SCNpilot_expt_500_bf_scaffold_565_12
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9575..10510)
DNA (936bp) protein (312aa)
2-dehydropantoate 2-reductase {ECO:0000256|RuleBase:RU003776}; EC=1.1.1.169 {ECO:0000256|RuleBase:RU003776};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
2-dehydropantoate 2-reductase; K00077 2-dehydropantoate 2-reductase [EC:1.1.1.169] rbh
2-dehydropantoate 2-reductase n=1 Tax=Rhodovulum sp. PH10 RepID=J6LL10_9RHOB rbh
SCNpilot_expt_500_bf_scaffold_565_13
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10630..11379
DNA (750bp) protein (250aa)
GntR family transcriptional regulator n=1 Tax=Burkholderia terrae BS001 RepID=I5CZP1_9BURK
GntR family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
SCNpilot_expt_500_bf_scaffold_565_14
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11778..13037)
DNA (1260bp) protein (420aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NJ49_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS27595.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_565_15
unknown

Not on your lists

13251..13580
DNA (330bp) protein (110aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_565_16
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13774..15282)
DNA (1509bp) protein (503aa)
Integral membrane protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JGQ1_OLICO rbh
hypothetical protein; K07793 putative tricarboxylic transport membrane protein rbh
Putative transmembrane protein {ECO:0000313|EMBL:AEI06049.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_500_bf_scaffold_565_17
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15289..15822)
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V8M1_9BRAD
Tripartite tricarboxylate transporter TctB family protein {ECO:0000313|EMBL:CEG08617.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_565_18
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15862..16830)
DNA (969bp) protein (323aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NE07_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS28832.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_565_19
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17348..18505
DNA (1158bp) protein (386aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003644044 rbh
Amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:ETR76955.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
family 3 extracellular solute-binding protein rbh
SCNpilot_expt_500_bf_scaffold_565_20
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18648..19535
DNA (888bp) protein (296aa)
ModE molybdate transport repressor domain-containing protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NKF6_AFIFE rbh
ModE molybdate transport repressor domain-containing protein {ECO:0000313|EMBL:EKS28924.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
LysR family transcriptional regulator rbh
SCNpilot_expt_500_bf_scaffold_565_21
unknown

Not on your lists

19694..20077
DNA (384bp) protein (128aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_565_22
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20134..21087)
DNA (954bp) protein (318aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI00035D5111
hypothetical protein
CHAD protein {ECO:0000313|EMBL:ABE62722.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_expt_500_bf_scaffold_565_23
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21145..21993)
DNA (849bp) protein (283aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI000366E774 rbh
universal stress protein family protein rbh
Universal stress protein family protein {ECO:0000313|EMBL:AEI05994.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_500_bf_scaffold_565_24
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22194..22394
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0GCT1_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL78568.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
SCNpilot_expt_500_bf_scaffold_565_25
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22600..22869
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V3D5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG07039.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
Displaying 25 items

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