name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_500_bf_scaffold_1130_1
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1..288)
|
Branched-chain amino acid transport system permease n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1GUK1_9BRAD
Branched-chain amino acid transport system permease {ECO:0000313|EMBL:ERF81242.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
ABC transporter permease; K01997 branched-chain amino acid transport system permease protein
|
|
SCNpilot_expt_500_bf_scaffold_1130_2
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(310..993)
|
Branched-chain amino acid transport ATP-binding protein n=2 Tax=Bradyrhizobiaceae RepID=F7QLX3_9BRAD
rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS42413.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
livF3; branched-chain amino acid ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein
rbh
|
|
SCNpilot_expt_500_bf_scaffold_1130_3
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(986..1744)
|
amino acid ABC transporter ATP-binding protein n=1 Tax=Afipia birgiae RepID=UPI0002D854CC
rbh
ABC transporter-like protein; K01995 branched-chain amino acid transport system ATP-binding protein
rbh
ABC transporter related {ECO:0000313|EMBL:ABD88500.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
|
|
SCNpilot_expt_500_bf_scaffold_1130_4
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
2028..2672
|
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0003755BB2
Uncharacterized protein {ECO:0000313|EMBL:KJC50996.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
hypothetical protein
|
|
SCNpilot_expt_500_bf_scaffold_1130_5
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2725..3090)
|
Arsenate reductase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V5W3_9BRAD
Arsenate reductase {ECO:0000313|EMBL:EFI51710.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein
|
|
SCNpilot_expt_500_bf_scaffold_1130_6
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3212..3445)
|
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V5V8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG08301.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
|
|
SCNpilot_expt_500_bf_scaffold_1130_7
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3550..4248)
|
ThiJ/PfpI domain protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V5V7_9BRAD
rbh
ThiJ/PfpI domain protein {ECO:0000313|EMBL:EFI51704.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
ThiJ/PfpI domain-containing protein
rbh
|
|
SCNpilot_expt_500_bf_scaffold_1130_8
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
4309..5298
|
Transcriptional regulator, AraC family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V5V6_9BRAD
rbh
Isonitrile hydratase {ECO:0000313|EMBL:CEG08304.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
ThiJ/PfpI domain-containing protein
rbh
|
|
SCNpilot_expt_500_bf_scaffold_1130_9
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5322..6386)
|
Choloylglycine hydrolase; K01442 choloylglycine hydrolase [EC:3.5.1.24]
Choloylglycine hydrolase n=2 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=B5ZEP7_GLUDA
Choloylglycine hydrolase {ECO:0000313|EMBL:ACI52037.1}; Flags: Precursor;; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
|
|
SCNpilot_expt_500_bf_scaffold_1130_10
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6597..8192)
|
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008786}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
GMP synthase [glutamine-hydrolyzing] n=1 Tax=Afipia felis ATCC 53690 RepID=K8ND66_AFIFE
rbh
|
|
SCNpilot_expt_500_bf_scaffold_1130_11
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(8256..9515)
|
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PDA0_9BRAD
rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS39536.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
|
|
SCNpilot_expt_500_bf_scaffold_1130_12
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(9526..9834)
|
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NJB4_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:CEG08307.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
|
|
SCNpilot_expt_500_bf_scaffold_1130_13
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10051..11502)
|
guaB; inosine 5'-monophosphate dehydrogenase (EC:1.1.1.205); K00088 IMP dehydrogenase [EC:1.1.1.205]
Inosine-5'-monophosphate dehydrogenase GuaB {ECO:0000313|EMBL:AEI06296.1}; EC=1.1.1.205 {ECO:0000313|EMBL:AEI06296.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Inosine-5'-monophosphate dehydrogenase n=2 Tax=Oligotropha carboxidovorans RepID=B6JHM7_OLICO
|
|
SCNpilot_expt_500_bf_scaffold_1130_14
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11821..13284
|
Drug:H+ antiporter-2 (14 Spanner) (DHA2) family drug resistance MFS transporter n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PFJ5_9BRAD
rbh
Drug:H+ antiporter-2 (14 Spanner) (DHA2) family drug resistance MFS transporter {ECO:0000313|EMBL:EKS39529.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
inner membrane transport protein YieO
rbh
|
|
SCNpilot_expt_500_bf_scaffold_1130_15
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(13277..13987)
|
rrmJ; ribosomal RNA large subunit methyltransferase J (EC:2.1.1.-); K02427 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
rbh
Ribosomal RNA large subunit methyltransferase E {ECO:0000255|HAMAP-Rule:MF_01547}; EC=2.1.1.166 {ECO:0000255|HAMAP-Rule:MF_01547};; 23S rRNA Um2552 methyltransferase {ECO:0000255|HAMAP-Rule:MF_01547}; rRNA (uridine-2'-O-)-methyltransferase {ECO:0000255|HAMAP-Rule:MF_01547}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Ribosomal RNA large subunit methyltransferase E n=2 Tax=Oligotropha carboxidovorans RepID=RLME_OLICO
rbh
|
|
SCNpilot_expt_500_bf_scaffold_1130_16
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(13995..15056)
|
Ppx/GppA phosphatase; K01524 exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
rbh
Ppx/GppA phosphatase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V5U8_9BRAD
rbh
Ppx/GppA phosphatase {ECO:0000313|EMBL:EFI51695.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
|
|
SCNpilot_expt_500_bf_scaffold_1130_17
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
15111..15662
|
UPF0178 protein OCA5_c15780/OCAR_6475 n=2 Tax=Oligotropha carboxidovorans RepID=B6JHN2_OLICO
hypothetical protein; K09768 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI06292.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
|
|
SCNpilot_expt_500_bf_scaffold_1130_18
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
15668..16786
|
elongation factor 3 n=1 Tax=Afipia birgiae RepID=UPI00031D9F1C
Uncharacterized protein {ECO:0000313|EMBL:EKS42385.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
holdfast attachment protein C (Protein HfaC); K15738 ATP-binding cassette, subfamily F, uup
|
|
SCNpilot_expt_500_bf_scaffold_1130_19
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
16783..17442
|
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PS85_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42385.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
uup; ABC transporter ATP-binding protein; K15738 ATP-binding cassette, subfamily F, uup
|
|
SCNpilot_expt_500_bf_scaffold_1130_20
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(17724..18923)
|
Putative branched chain amino acid periplasmic binding protein of ABC transporter n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21D83_RHOPB
rbh
putative branched chain amino acid periplasmic binding protein of ABC transporter
rbh
Putative branched chain amino acid periplasmic binding protein of ABC transporter {ECO:0000313|EMBL:ABD85653.1}; Flags: Precursor;; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
|
|
SCNpilot_expt_500_bf_scaffold_1130_21
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(19038..20261)
|
HI0933 family flavoprotein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1ICV7_9BRAD
rbh
HI0933 family flavoprotein {ECO:0000313|EMBL:ERF80204.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein; K07007
rbh
|
|
SCNpilot_expt_500_bf_scaffold_1130_22
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(20258..21190)
|
3-oxoacyl-ACP reductase n=1 Tax=Afipia birgiae RepID=UPI00030A4F43
Uncharacterized protein {ECO:0000313|EMBL:EKS39520.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
short-chain dehydrogenase
|
|
SCNpilot_expt_500_bf_scaffold_1130_23
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(21218..22927)
|
AMP-dependent synthetase and ligase; K01895 acetyl-CoA synthetase [EC:6.2.1.1]
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PLC6_9BRAD
rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS42381.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
|
|
SCNpilot_expt_500_bf_scaffold_1130_24
Streptomyces sp. AcH 505, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria
|
Not on your lists |
comp(22940..23827)
|
3-hydroxyisobutyrate dehydrogenase {ECO:0000256|RuleBase:RU910714}; Short=HIBADH {ECO:0000256|RuleBase:RU910714};; EC=1.1.1.31 {ECO:0000256|RuleBase:RU910714};; TaxID=352211 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. AcH 505.;"
3-hydroxyisobutyrate dehydrogenase; K00020 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
3-hydroxyisobutyrate dehydrogenase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PA80_9BRAD
|
|
SCNpilot_expt_500_bf_scaffold_1130_25
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(23874..24956)
|
Enoyl-CoA hydratase n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0G9P1_9BRAD
rbh
Enoyl-CoA hydratase {ECO:0000313|EMBL:BAL77478.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
|
|
SCNpilot_expt_500_bf_scaffold_1130_26
Streptomyces sp. AcH 505, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria
|
Not on your lists |
comp(24953..26098)
|
acyl-CoA dehydrogenase n=1 Tax=Afipia birgiae RepID=UPI0002EB0B84
rbh
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KIF65850.1}; TaxID=352211 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. AcH 505.;"
|
|
SCNpilot_expt_500_bf_scaffold_1130_27
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(26122..27615)
|
Methylmalonate-semialdehyde dehydrogenase {ECO:0000313|EMBL:CCE03172.1}; EC=1.2.1.27 {ECO:0000313|EMBL:CCE03172.1};; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
methylmalonate-semialdehyde dehydrogenase (EC:1.2.1.27); K00140 malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
rbh
Methylmalonate-semialdehyde dehydrogenase n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0T9P5_9BRAD
rbh
|
|
SCNpilot_expt_500_bf_scaffold_1130_28
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(27782..28402)
|
TetR family transcriptional regulator n=1 Tax=Afipia birgiae RepID=UPI00031B5091
Uncharacterized protein {ECO:0000313|EMBL:EKS39513.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
TetR family transcriptional regulator
|
|
SCNpilot_expt_500_bf_scaffold_1130_29
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
28574..29857
|
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NQS0_AFIFE
rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS28573.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
MFS transporter protein
rbh
|
|
SCNpilot_expt_500_bf_scaffold_1130_30
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
29900..30586
|
fabF; 3-oxoacyl-ACP synthase (EC:2.3.1.41); K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=3 Tax=Oligotropha carboxidovorans RepID=B6JHQ4_OLICO
|