ggKbase home page

SCNpilot_expt_500_bf_scaffold_1244

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1244_1
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1378
DNA (1377bp) protein (459aa)
PAS domain S-box protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NGD4_AFIFE rbh
PAS domain S-box protein {ECO:0000313|EMBL:EKS28066.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor; K03776 aerotaxis receptor rbh
SCNpilot_expt_500_bf_scaffold_1244_2
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1445..2749)
DNA (1305bp) protein (435aa)
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369, ECO:0000256|RuleBase:RU003370}; EC=2.3.3.16 {ECO:0000256|RuleBase:RU003370};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
gltA; citrate synthase GltA (EC:2.3.3.1); K01647 citrate synthase [EC:2.3.3.1] rbh
Citrate synthase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V9M4_9BRAD rbh
SCNpilot_expt_500_bf_scaffold_1244_3
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2895..4316)
DNA (1422bp) protein (474aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
gltX; glutamyl-tRNA synthetase (EC:6.1.1.17); K01885 glutamyl-tRNA synthetase [EC:6.1.1.17] rbh
Glutamate--tRNA ligase n=1 Tax=Afipia felis ATCC 53690 RepID=K8NPA8_AFIFE rbh
SCNpilot_expt_500_bf_scaffold_1244_4
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4528..6204
DNA (1677bp) protein (559aa)
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00126}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
glnS; glutamine-tRNA ligase GlnS (EC:6.1.1.18); K01886 glutaminyl-tRNA synthetase [EC:6.1.1.18] rbh
Glutamine--tRNA ligase n=1 Tax=Afipia felis ATCC 53690 RepID=K8NHZ0_AFIFE rbh
SCNpilot_expt_500_bf_scaffold_1244_5
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6262..6858
DNA (597bp) protein (199aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5Y6B5_9BRAD rbh
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ99499.1}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
conjugative transposon protein
SCNpilot_expt_500_bf_scaffold_1244_6
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6855..7163)
DNA (309bp) protein (103aa)
Uncharacterized protein {ECO:0000313|EMBL:KGT77972.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
SCNpilot_expt_500_bf_scaffold_1244_7
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7342..8859
DNA (1518bp) protein (506aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P9F8_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS38161.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein; K02238 competence protein ComEC rbh
SCNpilot_expt_500_bf_scaffold_1244_8
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8877..9584
DNA (708bp) protein (236aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI000308E1DA
Uncharacterized protein {ECO:0000313|EMBL:EKS38161.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein; K02238 competence protein ComEC
SCNpilot_expt_500_bf_scaffold_1244_9
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9824..10525)
DNA (702bp) protein (234aa)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|RuleBase:RU003992}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|RuleBase:RU003992};; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
lexA; repressor LexA (EC:3.4.21.88); K01356 repressor LexA [EC:3.4.21.88] rbh
LexA repressor n=1 Tax=Afipia felis ATCC 53690 RepID=K8NGE0_AFIFE rbh
SCNpilot_expt_500_bf_scaffold_1244_10
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10756..11988)
DNA (1233bp) protein (411aa)
moeA3; molybdopterin biosynthesis protein MoeA; K03750 molybdopterin molybdotransferase [EC:2.10.1.1] rbh
Molybdenum cofactor synthesis domain protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V9L6_9BRAD rbh
Molybdenum cofactor synthesis domain protein {ECO:0000313|EMBL:EFI50160.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
SCNpilot_expt_500_bf_scaffold_1244_11
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11996..12481)
DNA (486bp) protein (162aa)
Cyclic pyranopterin monophosphate synthase accessory protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V9L5_9BRAD
moaC; GTP cyclohydrolase subunit MoaC; K03637 molybdenum cofactor biosynthesis protein C
Cyclic pyranopterin monophosphate synthase accessory protein {ECO:0000256|HAMAP-Rule:MF_01224}; Molybdenum cofactor biosynthesis protein C {ECO:0000256|HAMAP-Rule:MF_01224}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
SCNpilot_expt_500_bf_scaffold_1244_12
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12492..13319)
DNA (828bp) protein (276aa)
Indole-3-glycerol phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046689}; Short=IGPS {ECO:0000256|HAMAP-Rule:MF_00134};; EC=4.1.1.48 {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046705};; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
Indole-3-glycerol phosphate synthase; K01609 indole-3-glycerol phosphate synthase [EC:4.1.1.48]
Indole-3-glycerol phosphate synthase n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D969_BRAJP
SCNpilot_expt_500_bf_scaffold_1244_13
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13334..14347)
DNA (1014bp) protein (338aa)
trpD; anthranilate phosphoribosyltransferase; K00766 anthranilate phosphoribosyltransferase [EC:2.4.2.18] rbh
Anthranilate phosphoribosyltransferase {ECO:0000255|HAMAP-Rule:MF_00211}; EC=2.4.2.18 {ECO:0000255|HAMAP-Rule:MF_00211};; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
Anthranilate phosphoribosyltransferase n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=TRPD_RHOP5 rbh
SCNpilot_expt_500_bf_scaffold_1244_14
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14352..16259)
DNA (1908bp) protein (636aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
putative peptidyl-prolyl cis-trans isomerase; K03770 peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] rbh
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 PF06_9BRAD">RepID=K8PF06_9BRAD rbh
SCNpilot_expt_500_bf_scaffold_1244_15
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16462..17229
DNA (768bp) protein (256aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
tpiA; triosephosphate isomerase; K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1] rbh
Triosephosphate isomerase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PFK7_9BRAD rbh
SCNpilot_expt_500_bf_scaffold_1244_16
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17481..17858
DNA (378bp) protein (126aa)
Preprotein translocase subunit SecG n=2 Tax=Bradyrhizobiaceae RepID=F7QMJ3_9BRAD
Preprotein translocase, SecG subunit {ECO:0000313|EMBL:EKS40322.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
secG; preprotein translocase subunit SecG; K03075 preprotein translocase subunit SecG
SCNpilot_expt_500_bf_scaffold_1244_17
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18023..19654
DNA (1632bp) protein (544aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
CTP synthase n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SHN3_9BRAD rbh
CTP synthetase rbh
SCNpilot_expt_500_bf_scaffold_1244_18
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19737..20552
DNA (816bp) protein (272aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JFY9_OLICO rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEI06449.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_500_bf_scaffold_1244_19
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20714..21046
DNA (333bp) protein (111aa)
NIPSNAP family containing protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V9K7_9BRAD
NIPSNAP family containing protein {ECO:0000313|EMBL:EFI50151.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
nipsnap family containing protein
SCNpilot_expt_500_bf_scaffold_1244_20
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21111..21806
DNA (696bp) protein (232aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QMJ8_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EGP07563.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
Displaying 20 items

View Taxonomy