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SCNpilot_expt_500_bf_scaffold_1710

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1710_1
unknown

Not on your lists

comp(2..313)
DNA (312bp) protein (104aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1710_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(354..1148)
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FJW3_9RHIZ
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
SCNpilot_expt_500_bf_scaffold_1710_3
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1196..2284)
DNA (1089bp) protein (363aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NKM6_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29666.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
NMT1/THI5 like domain-containing protein; K02051 NitT/TauT family transport system substrate-binding protein
SCNpilot_expt_500_bf_scaffold_1710_4
Celeribacter indicus, Celeribacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2313..3143)
DNA (831bp) protein (277aa)
ABC transporter permease n=1 Tax=Herbaspirillum lusitanum RepID=UPI0002FAE631
NitT/TauT family transport system permease protein {ECO:0000313|EMBL:AJE46851.1}; TaxID=1208324 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Celeribacter.;" source="Celeribacter indicus.;"
binding-protein-dependent transport system inner membrane protein; K02050 NitT/TauT family transport system permease protein
SCNpilot_expt_500_bf_scaffold_1710_5
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3140..3949)
DNA (810bp) protein (270aa)
ABC transporter, ATP-binding protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZZ31_9PROT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EHM01749.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
putative ABC transporter, ATP-binding component
SCNpilot_expt_500_bf_scaffold_1710_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4212..5012
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PQR9_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS41870.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein; K07090 rbh
SCNpilot_expt_500_bf_scaffold_1710_7
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5052..5378)
DNA (327bp) protein (109aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00031D3A5D
YggT family protein {ECO:0000313|EMBL:ERF85757.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
NIPSNAP family containing protein
SCNpilot_expt_500_bf_scaffold_1710_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5548..5892
DNA (345bp) protein (115aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13F92_RHOPS
Uncharacterized protein {ECO:0000313|EMBL:KIZ48013.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1710_9
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5920..6132
DNA (213bp) protein (71aa)
Uncharacterized protein n=3 Tax=Oligotropha carboxidovorans RepID=F8BPE1_OLICM
Uncharacterized protein {ECO:0000313|EMBL:ETR76614.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1710_10
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6277..7590
DNA (1314bp) protein (438aa)
MFS transporter, metabolite:H+ symporter (MHS) family protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NB71_AFIFE rbh
MFS transporter, metabolite:H+ symporter (MHS) family protein {ECO:0000313|EMBL:EKS27812.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
general substrate transporter
SCNpilot_expt_500_bf_scaffold_1710_11
unknown

Not on your lists

7654..7809
DNA (156bp) protein (52aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1710_12
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7821..8330)
DNA (510bp) protein (170aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI000363DE45
Uncharacterized protein {ECO:0000313|EMBL:EKS28213.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1710_13
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8406..9305)
DNA (900bp) protein (300aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002D2C35C
Uncharacterized protein {ECO:0000313|EMBL:EKS39897.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1710_14
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9302..9949)
DNA (648bp) protein (216aa)
Putative transcriptional regulator, Crp/Fnr family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6J3_9BRAD rbh
Putative transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:EFI51940.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
cyclic nucleotide-binding domain-containing protein rbh
SCNpilot_expt_500_bf_scaffold_1710_15
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10243..11028)
DNA (786bp) protein (262aa)
Metal-dependent hydrolase n=2 Tax=Oligotropha carboxidovorans RepID=B6JF85_OLICO rbh
Ribonuclease BN {ECO:0000313|EMBL:CEG08052.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
metal-dependent hydrolase rbh
SCNpilot_expt_500_bf_scaffold_1710_16
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11172..13409)
DNA (2238bp) protein (746aa)
adenylate/guanylate cyclase (EC:4.6.1.1); K01768 adenylate cyclase [EC:4.6.1.1] rbh
adenylate cyclase n=1 Tax=Afipia birgiae RepID=UPI000376C5A7 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS39900.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_500_bf_scaffold_1710_17
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13645..13842)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NPS6_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS28208.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1710_18
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14053..14259
DNA (207bp) protein (69aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JF88_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI06551.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_500_bf_scaffold_1710_19
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14279..14989)
DNA (711bp) protein (237aa)
Dimethylmenaquinone methyltransferase n=2 Tax=Oligotropha carboxidovorans RepID=B6JF89_OLICO rbh
hypothetical protein rbh
4-hydroxy-2-oxoglutarate aldolase {ECO:0000313|EMBL:CEG08048.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
SCNpilot_expt_500_bf_scaffold_1710_20
unknown

Not on your lists

comp(15047..15835)
DNA (789bp) protein (263aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1710_21
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15885..16757
DNA (873bp) protein (291aa)
Allophanate hydrolase subunit 2 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLQ8_NITHX
allophanate hydrolase subunit 2
Allophanate hydrolase subunit 2 {ECO:0000313|EMBL:ABE62839.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_expt_500_bf_scaffold_1710_22
unknown

Not on your lists

comp(16800..16949)
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1710_23
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17342..18667
DNA (1326bp) protein (442aa)
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00179441};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000256|HAMAP-Rule:MF_01865}; TaxID=883079 species="Bacteria; Pro
hypothetical protein; K14441 ribosomal protein S12 methylthiotransferase [EC:2.-.-.-]
Ribosomal protein S12 methylthiotransferase RimO n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PI20_9BRAD rbh
SCNpilot_expt_500_bf_scaffold_1710_24
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18775..19752)
DNA (978bp) protein (326aa)
qor2; quinone oxidoreductase Qor (EC:1.6.5.5) rbh
Quinone oxidoreductase Qor {ECO:0000313|EMBL:AEI06545.1}; EC=1.6.5.5 {ECO:0000313|EMBL:AEI06545.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Quinone oxidoreductase n=2 Tax=Oligotropha carboxidovorans RepID=B6JF94_OLICO rbh
SCNpilot_expt_500_bf_scaffold_1710_25
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19842..20570)
DNA (729bp) protein (243aa)
membrane protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003720F93 rbh
Membrane protein {ECO:0000313|EMBL:KJC60123.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
TerC family integral membrane protein rbh
SCNpilot_expt_500_bf_scaffold_1710_26
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20567..21295)
DNA (729bp) protein (243aa)
Phosphatidylcholine synthase {ECO:0000256|PIRNR:PIRNR000851}; Short=PC synthase {ECO:0000256|PIRNR:PIRNR000851};; Short=PCS {ECO:0000256|PIRNR:PIRNR000851};; EC=2.7.8.24 {ECO:0000256|PIRNR:PIRNR000851};; CDP-diglyceride-choline O-phosphatidyltransferase {ECO:0000256|PIRNR:PIRNR000851}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
phosphatidylcholine synthase; K01004 phosphatidylcholine synthase [EC:2.7.8.24]
Phosphatidylcholine synthase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PFW6_9BRAD
SCNpilot_expt_500_bf_scaffold_1710_27
Bradyrhizobium sp. ORS 285, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21465..22664
DNA (1200bp) protein (400aa)
2-octaprenyl-6-methoxyphenyl hydroxylase; K03185 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-] rbh
Putative FAD-dependent monoxygenase 2-octaprenyl-6-mehtoxyphenol hydroxylase n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0S355_9BRAD rbh
Putative FAD-dependent monoxygenase 2-octaprenyl-6-mehtoxyphenol hydroxylase {ECO:0000313|EMBL:CCD88632.1}; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 285.;"
SCNpilot_expt_500_bf_scaffold_1710_28
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22670..23623)
DNA (954bp) protein (318aa)
malonate transporter n=1 Tax=Afipia birgiae RepID=UPI0003176D42
Malonate transporter {ECO:0000313|EMBL:KIZ45497.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
auxin efflux carrier; K07088
SCNpilot_expt_500_bf_scaffold_1710_29
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23732..24067
DNA (336bp) protein (112aa)
Hemimethylated DNA binding domain-containing protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P634_9BRAD
Hemimethylated DNA binding domain-containing protein {ECO:0000313|EMBL:EKS38052.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein; K11940 heat shock protein HspQ
SCNpilot_expt_500_bf_scaffold_1710_30
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24166..24933)
DNA (768bp) protein (256aa)
invasion associated locus B n=1 Tax=Afipia birgiae RepID=UPI0003756A1F
Uncharacterized protein {ECO:0000313|EMBL:EKS38054.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
invasion associated locus B
Displaying items 1-30 of 31 in total

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