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SCNpilot_expt_500_bf_scaffold_1732

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1732_1
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..204
DNA (204bp) protein (68aa)
RNA polymerase sigma factor RpoD n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YNC5_9BRAD
RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
SCNpilot_expt_500_bf_scaffold_1732_2
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(343..684)
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V302_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG07189.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1732_3
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1151..1957
DNA (807bp) protein (269aa)
Lytic murein transglycosylase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21AN2_RHOPB rbh
lytic murein transglycosylase rbh
Lytic murein transglycosylase {ECO:0000313|EMBL:ABD86554.1}; Flags: Precursor;; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_expt_500_bf_scaffold_1732_4
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2157..2291)
DNA (135bp) protein (45aa)
Uncharacterized protein {ECO:0000313|EMBL:KGD53187.1}; TaxID=28450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei (Pseudomonas pseudomallei).;"
SCNpilot_expt_500_bf_scaffold_1732_5
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2715..3908
DNA (1194bp) protein (398aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P2Z9_9BRAD
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EKS36957.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
diguanylate cyclase
SCNpilot_expt_500_bf_scaffold_1732_6
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4052..4615
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NPX8_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS31186.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1732_7
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4653..4940)
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NLI7_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS31187.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1732_8
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5310..5717)
DNA (408bp) protein (136aa)
msrB2; peptide methionine sulfoxide reductase MsrB (EC:1.8.4.12); K07305 peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
Peptide methionine sulfoxide reductase MsrB {ECO:0000313|EMBL:AEI07512.1}; EC=1.8.4.12 {ECO:0000313|EMBL:AEI07512.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Peptide methionine sulfoxide reductase MsrB n=2 Tax=Oligotropha carboxidovorans RepID=B6JC64_OLICO
SCNpilot_expt_500_bf_scaffold_1732_9
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5736..6461)
DNA (726bp) protein (242aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
msrA1; peptide methionine sulfoxide reductase MsrA (EC:1.8.4.11); K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] rbh
Peptide methionine sulfoxide reductase MsrA n=2 Tax=Bradyrhizobiaceae RepID=F7QFQ8_9BRAD rbh
SCNpilot_expt_500_bf_scaffold_1732_10
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6789..6980
DNA (192bp) protein (64aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI000361C898
Uncharacterized protein {ECO:0000313|EMBL:EGP08638.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
SCNpilot_expt_500_bf_scaffold_1732_11
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7090..7473)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NWD0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS32779.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1732_12
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7547..8764)
DNA (1218bp) protein (406aa)
exodeoxyribonuclease V; K01144 exodeoxyribonuclease V [EC:3.1.11.5] rbh
Exodeoxyribonuclease V n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2Z4_9BRAD rbh
Conjugal transfer relaxase TraA {ECO:0000313|EMBL:CEG07197.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
SCNpilot_expt_500_bf_scaffold_1732_13
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8823..9227
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2Z3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG07198.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1732_14
unknown

Not on your lists

9262..9420
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1732_15
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9495..10808)
DNA (1314bp) protein (438aa)
ATPase AAA n=1 Tax=Afipia birgiae RepID=UPI00031468E7 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS41097.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Fis family two component transcriptional regulator sigma-54 specific rbh
SCNpilot_expt_500_bf_scaffold_1732_16
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10865..11218)
DNA (354bp) protein (118aa)
flagellar motor switch protein (EC:3.-.-.-); K02417 flagellar motor switch protein FliN/FliY
Flagellar motor switch protein FliN n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2V8_9BRAD
Flagellar motor switch protein FliN {ECO:0000313|EMBL:CEG07233.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
SCNpilot_expt_500_bf_scaffold_1732_17
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11222..11863)
DNA (642bp) protein (214aa)
Flagellar assembly protein FliH n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QJC4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS32788.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
fliH; flagellar assembly protein H; K02411 flagellar assembly protein FliH
SCNpilot_expt_500_bf_scaffold_1732_18
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11863..12951)
DNA (1089bp) protein (363aa)
Flagellar motor switch protein FliG n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QJC5_9BRAD rbh
Flagellar motor switch protein FliG {ECO:0000313|EMBL:EGP08650.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
fliG; flagellar motor switch protein FliG; K02410 flagellar motor switch protein FliG rbh
SCNpilot_expt_500_bf_scaffold_1732_19
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12958..14532)
DNA (1575bp) protein (525aa)
Flagellar M-ring protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QJC6_9BRAD rbh
Flagellar M-ring protein {ECO:0000256|PIRNR:PIRNR004862}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
fliF; flagellar MS-ring protein; K02409 flagellar M-ring protein FliF rbh
SCNpilot_expt_500_bf_scaffold_1732_20
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14826..15101)
DNA (276bp) protein (92aa)
Uncharacterized protein n=25 Tax=Bradyrhizobiaceae RepID=A4Z085_BRASO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE41068.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_expt_500_bf_scaffold_1732_21
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15277..15984)
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NYQ2_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS31303.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
flagellar hook capping protein; K02389 flagellar basal-body rod modification protein FlgD rbh
SCNpilot_expt_500_bf_scaffold_1732_22
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15995..17518)
DNA (1524bp) protein (508aa)
Flagellar hook-length control protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QJC9_9BRAD rbh
Flagellar hook-length control protein {ECO:0000313|EMBL:EGP08654.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
flagellar hook-length control protein
SCNpilot_expt_500_bf_scaffold_1732_23
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17776..18966
DNA (1191bp) protein (397aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
mnmA; tRNA-specific 2-thiouridylase MnmA; K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-] rbh
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QJD1_9BRAD rbh
SCNpilot_expt_500_bf_scaffold_1732_24
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18990..19628
DNA (639bp) protein (213aa)
phosphatidylethanolamine N-methyltransferase; K00551 phosphatidylethanolamine N-methyltransferase [EC:2.1.1.17]
Phosphatidyl-N-methylethanolamine N-methyltransferase {ECO:0000313|EMBL:ABD86558.1}; EC=2.1.1.71 {ECO:0000313|EMBL:ABD86558.1};; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
Phosphatidyl-N-methylethanolamine N-methyltransferase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21AM8_RHOPB
SCNpilot_expt_500_bf_scaffold_1732_25
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21129..21413
DNA (285bp) protein (95aa)
Uncharacterized protein n=3 Tax=Bradyrhizobium RepID=G7D292_BRAJP
Uncharacterized protein {ECO:0000313|EMBL:BAR53612.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1732_26
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21410..22114
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P9A7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36185.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein; K07402 xanthine dehydrogenase accessory factor
SCNpilot_expt_500_bf_scaffold_1732_27
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22131..23723
DNA (1593bp) protein (531aa)
MobA-related protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QPE3_9BRAD
MobA-related protein {ECO:0000313|EMBL:EGP06914.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
molybdopterin binding domain-containing protein
Displaying 27 items

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