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SCNpilot_expt_500_bf_scaffold_1760

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1760_1
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1391
DNA (1389bp) protein (463aa)
Photosynthetic reaction center M subunit n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H631_9BRAD rbh
Photosynthetic reaction center M subunit {ECO:0000313|EMBL:ERF85272.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
major facilitator superfamily transporter rbh
SCNpilot_expt_500_bf_scaffold_1760_2
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1487..2455
DNA (969bp) protein (323aa)
nit; nitrilase (EC:3.5.5.1); K01501 nitrilase [EC:3.5.5.1] rbh
Nitrilase blr3397; EC=3.5.5.7;; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
Nitrilase blr3397 n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=NITR2_BRADU rbh
SCNpilot_expt_500_bf_scaffold_1760_3
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2464..3144
DNA (681bp) protein (227aa)
Uncharacterized conserved protein n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6T0X2_JANMA
Uncharacterized protein {ECO:0000313|EMBL:KJC42279.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1760_4
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3247..4182)
DNA (936bp) protein (312aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NVB0_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS30153.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_1760_5
unknown

Not on your lists

4389..4691
DNA (303bp) protein (101aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1760_6
Cardiobacterium hominis, Cardiobacterium, Cardiobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4636..4992)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NBF1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EEV88119.1}; TaxID=638300 species="Bacteria; Proteobacteria; Gammaproteobacteria; Cardiobacteriales; Cardiobacteriaceae; Cardiobacterium.;" source="Cardiobacterium hominis ATCC 15826.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1760_7
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5468..6850
DNA (1383bp) protein (461aa)
Alcohol dehydrogenase zinc-binding domain protein n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B5ZU34_RHILW rbh
IMP dehydrogenase {ECO:0000313|EMBL:KKB11761.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
alcohol dehydrogenase zinc-binding domain-containing protein rbh
SCNpilot_expt_500_bf_scaffold_1760_8
unknown

Not on your lists

6847..7413
DNA (567bp) protein (189aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1760_9
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7215..8345)
DNA (1131bp) protein (377aa)
5-methyltetrahydropteroyltriglutamate--homocystei ne methyltransferase n=2 Tax=Oligotropha carboxidovorans RepID=B6JJH1_OLICO
methyltransferase
Methyltransferase {ECO:0000313|EMBL:AEI05394.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_500_bf_scaffold_1760_10
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8368..8631)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V8P9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG09068.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1760_11
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9169..9858)
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V8P9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EFI50537.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1760_12
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9870..10409)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V8P8_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EFI50536.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1760_13
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10475..10837)
DNA (363bp) protein (121aa)
Uncharacterized protein n=3 Tax=Bradyrhizobiaceae RepID=B6JJH6_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI05389.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_500_bf_scaffold_1760_14
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10931..11173)
DNA (243bp) protein (81aa)
SirA domain protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JJH7_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI05388.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_500_bf_scaffold_1760_15
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12372..12629)
DNA (258bp) protein (86aa)
Putative glycin-rich signal peptide protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6VA63_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG07700.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1760_16
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13045..13236
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAP2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG09847.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
SCNpilot_expt_500_bf_scaffold_1760_17
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13513..15126)
DNA (1614bp) protein (538aa)
Arabinose efflux permease family protein n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QDK0_9BRAD rbh
Arabinose efflux permease family protein {ECO:0000313|EMBL:EIG57856.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
General substrate transporter rbh
SCNpilot_expt_500_bf_scaffold_1760_18
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15162..15977)
DNA (816bp) protein (272aa)
Putative hydrolase or acyltransferase of alpha/beta superfamily n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QDK1_9BRAD rbh
Putative hydrolase or acyltransferase of alpha/beta superfamily {ECO:0000313|EMBL:EIG57857.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
Carboxylesterase rbh
SCNpilot_expt_500_bf_scaffold_1760_19
Rhizobium sp. IRBG74, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16209..17615
DNA (1407bp) protein (469aa)
chemotaxis protein CheY n=1 Tax=Rhizobium leguminosarum RepID=UPI00037F54D8 rbh
Fis family PAS modulated sigma-54 specific transcriptional regulator rbh
Fis family PAS modulated sigma-54 specific transcriptional regulator {ECO:0000313|EMBL:CDI11968.1}; TaxID=424182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. IRBG74.;"
SCNpilot_expt_500_bf_scaffold_1760_20
unknown

Not on your lists

17677..17910
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1760_21
Rhodococcus erythropolis, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18100..19020)
DNA (921bp) protein (307aa)
Transcriptional regulator MerR family protein n=1 Tax=Rhodococcus erythropolis CCM2595 RepID=T1VWG0_RHOER
transcriptional regulator MerR family protein
Transcriptional regulator MerR family protein {ECO:0000313|EMBL:AGT95435.1}; TaxID=1136179 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus erythropolis CCM2595.;"
SCNpilot_expt_500_bf_scaffold_1760_22
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19448..20398
DNA (951bp) protein (317aa)
amidase n=1 Tax=Bradyrhizobium japonicum RepID=UPI00036B4285 rbh
Amidase {ECO:0000313|EMBL:EWY36434.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
amidase rbh
SCNpilot_expt_500_bf_scaffold_1760_23
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20427..21647
DNA (1221bp) protein (407aa)
Extracellular ligand-binding receptor n=1 Tax=Pantoea sp. (strain At-9b) RepID=E6WKK5_PANSA rbh
Urea ABC transporter {ECO:0000313|EMBL:KGJ12036.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein rbh
SCNpilot_expt_500_bf_scaffold_1760_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21729..22595
DNA (867bp) protein (289aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XLE3_VARPD rbh
branched-chain amino acid ABC transporter, permease protein rbh
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:AGU53692.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_bf_scaffold_1760_25
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22592..23635
DNA (1044bp) protein (348aa)
ABC-type transporter, integral membrane subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUU2_9RHIZ rbh
ABC-type branched-chain amino acid transport system permease component {ECO:0000313|EMBL:EYR84494.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
branched-chain amino acid ABC transporter, permease protein rbh
SCNpilot_expt_500_bf_scaffold_1760_26
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23644..24351
DNA (708bp) protein (236aa)
Urea or short-chain amide ABC transporter n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YHN4_9PROT
Urea or short-chain amide ABC transporter {ECO:0000313|EMBL:EKM98411.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
urea or short-chain amide ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_500_bf_scaffold_1760_27
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24351..25043
DNA (693bp) protein (231aa)
ABC superfamily ATP binding cassette transporter, ABC protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TUH5_TISMK
livF; ABC superfamily ATP binding cassette transporter, ABC protein
ABC superfamily ATP binding cassette transporter, ABC protein {ECO:0000313|EMBL:AFK56413.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_expt_500_bf_scaffold_1760_28
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25321..26439
DNA (1119bp) protein (373aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EDK4_BRASB rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABQ34248.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
SCNpilot_expt_500_bf_scaffold_1760_29
unknown

Not on your lists

comp(26381..26986)
DNA (606bp) protein (202aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1760_30
unknown

Not on your lists

comp(27136..27423)
DNA (288bp) protein (96aa)

This feature has no annotations

Displaying items 1-30 of 36 in total

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