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SCNpilot_expt_500_bf_scaffold_8457

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_8457_1
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..413)
DNA (411bp) protein (137aa)
Aliphatic sulfonates family ABC transporter, substrate-binding protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P979_9BRAD
Aliphatic sulfonates family ABC transporter, substrate-binding protein {ECO:0000313|EMBL:EKS37349.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
ABC transporter substrate-binding protein, aliphatic sulfonates; K15553 sulfonate transport system substrate-binding protein
SCNpilot_expt_500_bf_scaffold_8457_2
unknown

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comp(613..870)
DNA (258bp) protein (86aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_8457_3

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comp(892..1344)
DNA (453bp) protein (151aa)
Predicted protein n=1 Tax=Brucella suis bv. 3 str. 686 RepID=D0PN60_BRUSS
Uncharacterized protein {ECO:0000313|EMBL:KKL16156.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCNpilot_expt_500_bf_scaffold_8457_4
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1787..2605)
DNA (819bp) protein (273aa)
Uncharacterised protein {ECO:0000313|EMBL:CRD98351.1}; TaxID=520 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis.;"
SCNpilot_expt_500_bf_scaffold_8457_5
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2761..3327
DNA (567bp) protein (189aa)
PII uridylyl-transferase; K00990 [protein-PII] uridylyltransferase [EC:2.7.7.59]
PII uridylyl-transferase n=1 Tax=Afipia birgiae RepID=UPI0002F2E1BE
Bifunctional uridylyltransferase/uridylyl-removing enzyme {ECO:0000256|HAMAP-Rule:MF_00277, ECO:0000256|SAAS:SAAS00228994}; Short=UTase/UR {ECO:0000256|HAMAP-Rule:MF_00277};; Bifunctional [protein-PII] modification enzyme {ECO:0000256|HAMAP-Rule:MF_00277}; Bifunctional nitrogen sensor protein {ECO:0000256|HAMAP-Rule:MF_00277}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
SCNpilot_expt_500_bf_scaffold_8457_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3328..3864)
DNA (537bp) protein (179aa)
methylated-DNA-[protein]-cysteine S-methyltransferase; K00567 methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
Methylated-DNA-[protein]-cysteine S-methyltransferase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P793_9BRAD
Methylated-DNA-[protein]-cysteine S-methyltransferase {ECO:0000313|EMBL:EKS37351.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_500_bf_scaffold_8457_7
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4023..4385
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P476_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS37352.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein; K08987 putative membrane protein
SCNpilot_expt_500_bf_scaffold_8457_8
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4510..6717
DNA (2208bp) protein (736aa)
Transpeptidase-transglycosylase {ECO:0000313|EMBL:EGP09058.1}; EC=2.4.1.129 {ECO:0000313|EMBL:EGP09058.1};; EC=3.4.-.- {ECO:0000313|EMBL:EGP09058.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
penicillin-binding protein 1A n=1 Tax=Afipia birgiae RepID=UPI0002D9E712 rbh
pbpC; penicillin-binding protein
SCNpilot_expt_500_bf_scaffold_8457_9
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6883..7722)
DNA (840bp) protein (280aa)
Zinc metalloprotease {ECO:0000313|EMBL:EGP09057.1}; EC=3.4.24.- {ECO:0000313|EMBL:EGP09057.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
Zinc metalloprotease n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QIG6_9BRAD rbh
zinc metallopeptidase; K07043 rbh
SCNpilot_expt_500_bf_scaffold_8457_10
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7980..8585)
DNA (606bp) protein (202aa)
polyhydroxyalkanoate depolymerase; K05973 poly(3-hydroxybutyrate) depolymerase [EC:3.1.1.75]
Polyhydroxyalkanoate depolymerase, intracellular n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P0U4_9BRAD
Polyhydroxyalkanoate depolymerase, intracellular {ECO:0000313|EMBL:EKS33270.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_500_bf_scaffold_8457_11
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

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8731..9333
DNA (603bp) protein (201aa)
id=12552115 bin=BDI tax=BDI organism_group=Betaproteobacteria
Uncharacterized protein {ECO:0000313|EMBL:KIJ71601.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
SCNpilot_expt_500_bf_scaffold_8457_12
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9447..9767)
DNA (321bp) protein (107aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QIG4_9BRAD
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein; K01992 ABC-2 type transport system permease protein
Displaying 12 items

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