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SCNpilot_expt_500_bf_scaffold_2364

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2364_1
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..645)
DNA (645bp) protein (215aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
aroE; shikimate dehydrogenase AroE (EC:1.1.1.25); K00014 shikimate dehydrogenase [EC:1.1.1.25]
shikimate 5-dehydrogenase n=1 Tax=Afipia birgiae RepID=UPI00037F2573
SCNpilot_expt_500_bf_scaffold_2364_2
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(673..2001)
DNA (1329bp) protein (443aa)
Sulfate permease n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PEQ4_9BRAD
Sulfate permease {ECO:0000313|EMBL:EKS36833.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
sulfate permease family protein; K03321 sulfate permease, SulP family
SCNpilot_expt_500_bf_scaffold_2364_3
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2042..2281)
DNA (240bp) protein (80aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QF56_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP10150.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2364_4
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2407..3294)
DNA (888bp) protein (296aa)
Translation elongation factor G n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PB65_9BRAD
Translation elongation factor G {ECO:0000313|EMBL:EKS36835.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
fusA; elongation factor G; K02355 elongation factor G
SCNpilot_expt_500_bf_scaffold_2364_5
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3322..4488)
DNA (1167bp) protein (389aa)
Translation elongation factor G n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P3Z1_9BRAD
Translation elongation factor G {ECO:0000313|EMBL:EKS35464.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
fusA; elongation factor G; K02355 elongation factor G
SCNpilot_expt_500_bf_scaffold_2364_6
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4857..5339)
DNA (483bp) protein (161aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8P739_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP10153.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2364_7
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5505..6035)
DNA (531bp) protein (177aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8P1Y3_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS35466.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2364_8
Methanosphaerula palustris, Methanosphaerula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

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comp(6199..6885)
DNA (687bp) protein (229aa)
GntR domain protein n=1 Tax=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) RepID=B8GGM0_METPE
GntR family transcriptional regulator
GntR domain protein {ECO:0000313|EMBL:ACL16275.1}; TaxID=521011 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanosphaerula.;" source="Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c).;"
SCNpilot_expt_500_bf_scaffold_2364_9
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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7073..8002
DNA (930bp) protein (310aa)
Dihydrodipicolinate synthase/N-acetylneuraminate lyase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DNH0_SINAD
dihydrodipicolinate synthase/N-acetylneuraminate lyase
Dihydrodipicolinate synthase/N-acetylneuraminate lyase {ECO:0000313|EMBL:AGA30378.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCNpilot_expt_500_bf_scaffold_2364_10
unknown

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comp(8875..9105)
DNA (231bp) protein (77aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2364_11
Streptomyces rapamycinicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9126..9359
DNA (234bp) protein (78aa)
transporter n=1 Tax=Saccharopolyspora spinosa RepID=UPI0002378C3D
Uncharacterized protein {ECO:0000313|EMBL:AGP51750.1}; TaxID=1343740 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces rapamycinicus NRRL 5491.;"
major facilitator superfamily protein
SCNpilot_expt_500_bf_scaffold_2364_12
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9404..10576)
DNA (1173bp) protein (391aa)
aatA; aspartate aminotransferase; K00812 aspartate aminotransferase [EC:2.6.1.1]
Aspartate aminotransferase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NYQ3_9BRAD rbh
Aspartate aminotransferase {ECO:0000313|EMBL:EKS35467.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_500_bf_scaffold_2364_13
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10857..11546
DNA (690bp) protein (230aa)
Phosphoesterase PA-phosphatase related protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V7M7_9BRAD
PAP2 superfamily protein {ECO:0000313|EMBL:CEG09273.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
Displaying 13 items

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