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SCNpilot_expt_500_bf_scaffold_1757

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1757_1
Crassostrea gigas, Crassostrea, Ostreoida, Pteriomorphia, Mollusca, Metazoa

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1195..1626
DNA (432bp) protein (144aa)
PREDICTED: probable G-protein coupled receptor B0563.6-like n=1 Tax=Aplysia californica RepID=UPI00035981F6
Uncharacterized protein {ECO:0000313|EMBL:EKC23312.1}; TaxID=29159 species="Eukaryota; Metazoa; Lophotrochozoa; Mollusca; Bivalvia; Pteriomorphia; Ostreoida; Ostreoidea; Ostreidae; Crassostrea.;" source="Crassostrea gigas (Pacific oyster) (Crassostrea angulata).;"
myosuppressin receptor
SCNpilot_expt_500_bf_scaffold_1757_2
Capitella teleta, Capitella, Capitellida, Scolecida, Annelida, Metazoa

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1726..2397
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Capitella teleta RepID=R7TBV7_CAPTE
Uncharacterized protein {ECO:0000313|EMBL:ELT88581.1, ECO:0000313|EnsemblMetazoa:CapteP89325}; TaxID=283909 species="Eukaryota; Metazoa; Lophotrochozoa; Annelida; Polychaeta; Scolecida; Capitellida; Capitellidae; Capitella.;" source="Capitella teleta (Polychaete worm).;"
Hypothetical protein CBG23201
SCNpilot_expt_500_bf_scaffold_1757_3
Hordeum vulgare, Hordeum, Poales, commelinids, Streptophyta, Viridiplantae

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3379..4392
DNA (1014bp) protein (338aa)
hypothetical protein ; K06071 protein kinase N [EC:2.7.11.13]
Predicted protein n=1 Tax=Hordeum vulgare var. distichum RepID=F2DZD9_HORVD
Predicted protein {ECO:0000313|EMBL:BAK00461.1}; TaxID=112509 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum.;" source="Hordeum vulgare var. distichum (Domesticated barley).;"
SCNpilot_expt_500_bf_scaffold_1757_4
Hordeum vulgare, Hordeum, Poales, commelinids, Streptophyta, Viridiplantae

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5301..5621
DNA (321bp) protein (107aa)
Predicted protein n=1 Tax=Hordeum vulgare var. distichum RepID=F2DZD9_HORVD
Predicted protein {ECO:0000313|EMBL:BAK00461.1}; TaxID=112509 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum.;" source="Hordeum vulgare var. distichum (Domesticated barley).;"
SCNpilot_expt_500_bf_scaffold_1757_5
Hordeum vulgare, Hordeum, Poales, commelinids, Streptophyta, Viridiplantae

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5845..6189
DNA (345bp) protein (115aa)
putative kinase domain protein; K06071 protein kinase N [EC:2.7.11.13]
Predicted protein n=1 Tax=Hordeum vulgare var. distichum RepID=F2DZD9_HORVD
Predicted protein {ECO:0000313|EMBL:BAK00461.1}; TaxID=112509 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum.;" source="Hordeum vulgare var. distichum (Domesticated barley).;"
SCNpilot_expt_500_bf_scaffold_1757_6
unknown

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comp(7536..8558)
DNA (1023bp) protein (341aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1757_7
unknown

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8882..9010
DNA (129bp) protein (43aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1757_8
unknown

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10215..10379
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1757_9
Latimeria chalumnae, Latimeria, Coelacanthiformes, Chordata, Metazoa

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10503..11228
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Latimeria chalumnae RepID=H3AY27_LATCH
Uncharacterized protein {ECO:0000313|Ensembl:ENSLACP00000014548}; TaxID=7897 species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria.;" source="Latimeria chalumnae (West Indian ocean coelacanth).;"
nuclear receptor ROR-beta-like; K08533 RAR-related orphan receptor beta
SCNpilot_expt_500_bf_scaffold_1757_10
unknown

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11705..11899
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1757_11
unknown

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12674..12841
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1757_12
Mus musculus, Mus, Rodentia, Mammalia, Chordata, Metazoa

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14217..14945
DNA (729bp) protein (243aa)
E3 ubiquitin-protein ligase PDZRN3 (Fragment) n=1 Tax=Rattus norvegicus RepID=F1LNG3_RAT
Pdzrn3, 1110020C07Rik, AI429718, AL023082, LNX3, SEMACAP3, Semcap3; PDZ domain containing RING finger 3; K15682 ligand of Numb protein X 3/4
Putative uncharacterized protein {ECO:0000313|EMBL:BAE25317.1}; Flags: Fragment;; TaxID=10090 species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus.;" source="Mus musculus (Mouse).;"
SCNpilot_expt_500_bf_scaffold_1757_13
unknown

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comp(15384..15650)
DNA (267bp) protein (89aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1757_14
Anoplophora glabripennis, Anoplophora, Coleoptera, Neoptera, Arthropoda, Metazoa

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16174..16680
DNA (507bp) protein (169aa)
Eukaryotic peptide chain release factor GTP-binding subunit ERF3B (Fragment) n=1 Tax=Anoplophora glabripennis RepID=V5GSA9_ANOGL
Eukaryotic peptide chain release factor GTP-binding subunit ERF3B {ECO:0000313|EMBL:JAB64482.1}; Flags: Fragment;; TaxID=217634 species="Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Chrysomeloidea; Cerambycidae; Lamiinae; Lamiini; Anoplophora.;" source="Anoplophora glabripennis (Asian longhorn beetle) (Anoplophora; nobilis).;"
similar to elongation factor 1 alpha; K03267 peptide chain release factor subunit 3
SCNpilot_expt_500_bf_scaffold_1757_15
Canis lupus, Canis, Carnivora, Mammalia, Chordata, Metazoa

Not on your lists

16826..17128
DNA (303bp) protein (101aa)
Eukaryotic peptide chain release factor GTP-binding subunit ERF3A n=2 Tax=Hominidae RepID=ERF3A_HUMAN
GSPT1, 551G9.2, ETF3A, FLJ38048, FLJ39067, GST1, eRF3a; G1 to S phase transition 1; K03267 peptide chain release factor subunit 3
Uncharacterized protein {ECO:0000313|Ensembl:ENSCAFP00000027821}; TaxID=9615 species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis.;" source="Canis familiaris (Dog) (Canis lupus familiaris).;"
SCNpilot_expt_500_bf_scaffold_1757_16
Arion vulgaris, Arion, Gastropoda, Mollusca, Metazoa

Not on your lists

17122..17358
DNA (237bp) protein (79aa)
PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like isoform X2 n=1 Tax=Aplysia californica RepID=UPI0003592CA5
Uncharacterized protein {ECO:0000313|EMBL:CEK79588.1}; TaxID=1028688 species="Eukaryota; Metazoa; Lophotrochozoa; Mollusca; Gastropoda; Heterobranchia; Euthyneura; Panpulmonata; Eupulmonata; Stylommatophora; Sigmurethra; Arionoidea; Arionidae; Arion.;" source="Arion vulgaris.;"
Elongation factor Tu C-terminal domain containing protein; K03267 peptide chain release factor subunit 3
SCNpilot_expt_500_bf_scaffold_1757_17
Pristionchus pacificus, Pristionchus, Diplogasterida, Chromadorea, Nematoda, Metazoa

Not on your lists

17557..17817
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Pristionchus pacificus RepID=H3ES02_PRIPA
Uncharacterized protein {ECO:0000313|EnsemblMetazoa:PPA12569}; TaxID=54126 species="Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Diplogasterida; Neodiplogasteridae; Pristionchus.;" source="Pristionchus pacificus (Parasitic nematode).;"
hypothetical protein; K03267 peptide chain release factor subunit 3
SCNpilot_expt_500_bf_scaffold_1757_18
Trichinella spiralis, Trichinella, Trichocephalida, Dorylaimia, Nematoda, Metazoa

Not on your lists

17873..18175
DNA (303bp) protein (101aa)
Eukaryotic peptide chain release factor GTP-binding subunit ERF3A n=1 Tax=Trichinella spiralis RepID=E5S015_TRISP
eukaryotic peptide chain release factor GTP-binding subunit ERF3A; K03267 peptide chain release factor subunit 3
Eukaryotic peptide chain release factor GTP-binding subunit ERF3A {ECO:0000313|EMBL:EFV61876.1}; TaxID=6334 species="Eukaryota; Metazoa; Ecdysozoa; Nematoda; Enoplea; Dorylaimia; Trichocephalida; Trichinellidae; Trichinella.;" source="Trichinella spiralis (Trichina worm).;"
SCNpilot_expt_500_bf_scaffold_1757_19
unknown

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18422..18685
DNA (264bp) protein (88aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1757_20
unknown

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19199..19486
DNA (288bp) protein (96aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1757_21
unknown

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19709..20008
DNA (300bp) protein (100aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1757_22
unknown

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19995..20471
DNA (477bp) protein (159aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1757_23
unknown

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20479..20625
DNA (147bp) protein (49aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1757_24
unknown

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comp(20866..21096)
DNA (231bp) protein (77aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1757_25
Saprolegnia diclina, Saprolegnia, Saprolegniales, Eukaryota

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comp(21805..22791)
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Saprolegnia diclina VS20 RepID=T0QNP5_9STRA
Uncharacterized protein {ECO:0000313|EMBL:EQC39734.1}; TaxID=1156394 species="Eukaryota; Stramenopiles; Oomycetes; Saprolegniales; Saprolegniaceae; Saprolegnia.;" source="Saprolegnia diclina VS20.;"
Displaying 25 items

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