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SCNpilot_expt_500_bf_scaffold_1785

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1785_1
Danio rerio, Danio, Cypriniformes, Neopterygii, Chordata, Metazoa

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115..495
DNA (381bp) protein (127aa)
PREDICTED: translin-associated factor X-interacting protein 1 isoform X1 n=1 Tax=Danio rerio RepID=UPI0003837FD1
tsnaxip1, wu:fc26b06, zgc:162756; translin-associated factor X interacting protein 1
Uncharacterized protein {ECO:0000313|Ensembl:ENSDARP00000043451}; TaxID=7955 species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio.;" source="Danio rerio (Zebrafish) (Brachydanio rerio).;"
SCNpilot_expt_500_bf_scaffold_1785_2
Capitella teleta, Capitella, Capitellida, Scolecida, Annelida, Metazoa

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comp(664..858)
DNA (195bp) protein (65aa)
Uncharacterized protein (Fragment) n=1 Tax=Capitella teleta RepID=R7TY79_CAPTE
Uncharacterized protein {ECO:0000313|EMBL:ELT96376.1, ECO:0000313|EnsemblMetazoa:CapteP147477}; Flags: Fragment;; TaxID=283909 species="Eukaryota; Metazoa; Lophotrochozoa; Annelida; Polychaeta; Scolecida; Capitellida; Capitellidae; Capitella.;" source="Capitella teleta (Polychaete worm).;"
similar to MGC83791 protein
SCNpilot_expt_500_bf_scaffold_1785_3
Latimeria chalumnae, Latimeria, Coelacanthiformes, Chordata, Metazoa

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comp(880..1110)
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Latimeria chalumnae RepID=H3AI69_LATCH
Uncharacterized protein {ECO:0000313|Ensembl:ENSLACP00000009340}; TaxID=7897 species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria.;" source="Latimeria chalumnae (West Indian ocean coelacanth).;"
ccdc77; coiled-coil domain containing 77
SCNpilot_expt_500_bf_scaffold_1785_4
Latimeria chalumnae, Latimeria, Coelacanthiformes, Chordata, Metazoa

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comp(1236..1688)
DNA (453bp) protein (151aa)
PREDICTED: coiled-coil domain-containing protein 77 isoform X1 n=1 Tax=Jaculus jaculus RepID=UPI0003331578
Uncharacterized protein {ECO:0000313|Ensembl:ENSLACP00000009340}; TaxID=7897 species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria.;" source="Latimeria chalumnae (West Indian ocean coelacanth).;"
ccdc77; coiled-coil domain containing 77
SCNpilot_expt_500_bf_scaffold_1785_5
Anolis carolinensis, Anolis, Squamata, Chordata, Metazoa

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comp(1681..2187)
DNA (507bp) protein (169aa)
PREDICTED: coiled-coil domain-containing protein 77-like n=1 Tax=Anolis carolinensis RepID=UPI00020394C1
coiled-coil domain-containing protein 77-like
Uncharacterized protein {ECO:0000313|Ensembl:ENSACAP00000000032}; TaxID=28377 species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Iguanidae; Polychrotinae; Anolis.;" source="Anolis carolinensis (Green anole) (American chameleon).;"
SCNpilot_expt_500_bf_scaffold_1785_6
unknown

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2481..2630
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1785_7
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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3343..3858
DNA (516bp) protein (172aa)
N-acetyltransferase GCN5; K03824 putative acetyltransferase [EC:2.3.1.-]
Putative uncharacterized protein n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5J0Z1_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK00734.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
SCNpilot_expt_500_bf_scaffold_1785_8
unknown

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4003..4314
DNA (312bp) protein (104aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1785_9
Aplysia californica, Aplysia, Gastropoda, Mollusca, Metazoa

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4567..6483
DNA (1917bp) protein (639aa)
Protein kinase C {ECO:0000256|SAAS:SAAS00253193}; EC=2.7.11.13 {ECO:0000256|SAAS:SAAS00253193};; TaxID=6500 species="Eukaryota; Metazoa; Lophotrochozoa; Mollusca; Gastropoda; Heterobranchia; Euthyneura; Euopisthobranchia; Aplysiomorpha; Aplysioidea; Aplysiidae; Aplysia.;" source="Aplysia californica (California sea hare).;"
PREDICTED: protein kinase C iota type-like n=1 Tax=Pundamilia nyererei RepID=UPI0003AFE940 rbh
protein kinase C iota type-like rbh
SCNpilot_expt_500_bf_scaffold_1785_10
Adineta vaga, Adineta, Adinetida, Bdelloidea, Rotifera, Metazoa

Not on your lists

comp(6670..7602)
DNA (933bp) protein (311aa)
Rhodopsin-like protein n=1 Tax=Adineta vaga RepID=B3G459_ADIVA
Rhodopsin-like protein {ECO:0000313|EMBL:ACD54607.1}; TaxID=104782 species="Eukaryota; Metazoa; Lophotrochozoa; Rotifera; Bdelloidea; Adinetida; Adinetidae; Adineta.;" source="Adineta vaga (Rotifer) (Callidina vaga).;"
SCNpilot_expt_500_bf_scaffold_1785_11
Strigamia maritima, Strigamia, Geophilomorpha, Pleurostigmophora, Arthropoda, Metazoa

Not on your lists

comp(7863..8276)
DNA (414bp) protein (138aa)
YL-1; CG4621 gene product from transcript CG4621-RA (EC:2.3.1.48); K11664 vacuolar protein sorting-associated protein 72
Uncharacterized protein n=1 Tax=Strigamia maritima RepID=T1JJ51_STRMM
Uncharacterized protein {ECO:0000313|EnsemblMetazoa:SMAR013881-PA}; TaxID=126957 species="Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Myriapoda; Chilopoda; Pleurostigmophora; Geophilomorpha; Linotaeniidae; Strigamia.;" source="Strigamia maritima (European centipede) (Geophilus maritimus).;"
SCNpilot_expt_500_bf_scaffold_1785_12
unknown

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8667..9002
DNA (336bp) protein (112aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1785_13
Acyrthosiphon pisum, Acyrthosiphon, Hemiptera, Neoptera, Arthropoda, Metazoa

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comp(8978..9106)
DNA (129bp) protein (43aa)
ACYPI009531 protein {ECO:0000313|EMBL:BAH72411.1}; TaxID=7029 species="Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha; Aphidiformes; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon.;" source="Acyrthosiphon pisum (Pea aphid).;"
SCNpilot_expt_500_bf_scaffold_1785_14
Homo sapiens, Homo, Primates, Mammalia, Chordata, Metazoa

Not on your lists

9294..9608
DNA (315bp) protein (105aa)
PREDICTED: DNA repair protein RAD51 homolog 1 isoform X3 n=1 Tax=Pantholops hodgsonii RepID=UPI0003C11E0E
RAD51, CRAD51; RAD51 homolog (S. cerevisiae); K04482 DNA repair protein RAD51
DNA repair protein RAD51 homolog 1 {ECO:0000313|Ensembl:ENSP00000436512}; TaxID=9606 species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.;" source="Homo sapiens (Human).;"
SCNpilot_expt_500_bf_scaffold_1785_15
Chelonia mydas, Chelonia, Testudines, Chordata, Metazoa

Not on your lists

9918..10118
DNA (201bp) protein (67aa)
Protein CASC5 n=1 Tax=Chelonia mydas RepID=M7AUY6_CHEMY
Protein CASC5 {ECO:0000313|EMBL:EMP26795.1}; TaxID=8469 species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia.;" source="Chelonia mydas (Green sea-turtle) (Chelonia agassizi).;"
rad51-b, brcc5, rad51, rad51a, reca, xrad51; RAD51 homolog (S. cerevisiae); K04482 DNA repair protein RAD51
SCNpilot_expt_500_bf_scaffold_1785_16
Stegodyphus mimosarum, Stegodyphus, Araneae, Arachnida, Arthropoda, Metazoa

Not on your lists

10157..10420
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Petromyzon marinus RepID=S4RBH5_PETMA
DNA repair protein RAD51-like protein {ECO:0000313|EMBL:KFM82841.1}; Flags: Fragment;; TaxID=407821 species="Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Araneae; Araneomorphae; Entelegynae; Eresoidea; Eresidae; Stegodyphus.;" source="Stegodyphus mimosarum.;"
DNA repair protein RAD51 homolog 1-like; K04482 DNA repair protein RAD51
SCNpilot_expt_500_bf_scaffold_1785_17
Ustilago maydis, Ustilago, Ustilaginales, Ustilaginomycetes, Basidiomycota, Fungi

Not on your lists

10447..10602
DNA (156bp) protein (52aa)
DNA repair protein RAD51 n=1 Tax=Ustilago maydis (strain 521 / FGSC 9021) RepID=RAD51_USTMA
DNA repair protein RAD51; K04482 DNA repair protein RAD51
Chromosome 8, whole genome shotgun sequence {ECO:0000313|EMBL:KIS68723.1}; TaxID=237631 species="Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Ustilago.;" source="Ustilago maydis (strain 521 / FGSC 9021) (Corn smut fungus).;"
SCNpilot_expt_500_bf_scaffold_1785_18
Adineta vaga, Adineta, Adinetida, Bdelloidea, Rotifera, Metazoa

Not on your lists

comp(10677..11555)
DNA (879bp) protein (293aa)
Rhodopsin-like protein n=1 Tax=Adineta vaga RepID=B3G459_ADIVA
Rhodopsin-like protein {ECO:0000313|EMBL:ACD54607.1}; TaxID=104782 species="Eukaryota; Metazoa; Lophotrochozoa; Rotifera; Bdelloidea; Adinetida; Adinetidae; Adineta.;" source="Adineta vaga (Rotifer) (Callidina vaga).;"
SCNpilot_expt_500_bf_scaffold_1785_19
unknown

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comp(12048..12488)
DNA (441bp) protein (147aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1785_20
unknown

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comp(12520..12771)
DNA (252bp) protein (84aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1785_21
unknown

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comp(12828..12941)
DNA (114bp) protein (38aa)

This feature has no annotations

Displaying 21 items

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