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SCNpilot_expt_500_bf_scaffold_3132

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3132_1
Stegodyphus mimosarum, Stegodyphus, Araneae, Arachnida, Arthropoda, Metazoa

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comp(48..533)
DNA (486bp) protein (162aa)
Signal recognition particle 14kDa n=1 Tax=Haliotis discus discus RepID=B6RB61_HALDI
Signal recognition particle protein {ECO:0000313|EMBL:KFM79556.1}; Flags: Fragment;; TaxID=407821 species="Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Araneae; Araneomorphae; Entelegynae; Eresoidea; Eresidae; Stegodyphus.;" source="Stegodyphus mimosarum.;"
signal recognition particle 14 kD protein, putative; K03104 signal recognition particle subunit SRP14
SCNpilot_expt_500_bf_scaffold_3132_2
Trichoplax adhaerens, Trichoplax, Placozoa, Metazoa

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comp(768..953)
DNA (186bp) protein (62aa)
Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RMN3_TRIAD
expressed hypothetical protein ; K12462 Rho GDP-dissociation inhibitor
Putative uncharacterized protein {ECO:0000313|EMBL:EDV27880.1}; TaxID=10228 species="Eukaryota; Metazoa; Placozoa; Trichoplax.;" source="Trichoplax adhaerens (Trichoplax reptans).;"
SCNpilot_expt_500_bf_scaffold_3132_3
Homo sapiens, Homo, Primates, Mammalia, Chordata, Metazoa

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comp(950..1459)
DNA (510bp) protein (170aa)
cDNA, FLJ92068, highly similar to Homo sapiens Rho GDP dissociation inhibitor (GDI) beta (ARHGDIB),mRNA n=1 Tax=Homo sapiens RepID=B2R4F3_HUMAN
cDNA, FLJ92068, highly similar to Homo sapiens Rho GDP dissociation inhibitor (GDI) beta (ARHGDIB),mRNA {ECO:0000313|EMBL:BAG34750.1}; TaxID=9606 species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.;" source="Homo sapiens (Human).;"
ARHGDIB; rho GDP-dissociation inhibitor 2 isoform 1
SCNpilot_expt_500_bf_scaffold_3132_4
unknown

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comp(1670..2995)
DNA (1326bp) protein (442aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3132_5
Dendroctonus ponderosae, Dendroctonus, Coleoptera, Neoptera, Arthropoda, Metazoa

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comp(2980..3402)
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Dendroctonus ponderosae RepID=U4UE73_DENPD
Uncharacterized protein {ECO:0000313|EMBL:ERL92279.1}; TaxID=77166 species="Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Curculionidae; Scolytinae; Dendroctonus.;" source="Dendroctonus ponderosae (Mountain pine beetle).;"
Ikbke; inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon
SCNpilot_expt_500_bf_scaffold_3132_6
unknown

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comp(3746..3886)
DNA (141bp) protein (47aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3132_7
Felis catus, Felis, Carnivora, Mammalia, Chordata, Metazoa

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comp(3917..4429)
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Felis catus RepID=M3WJG3_FELCA
IKBKE; inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon
Uncharacterized protein {ECO:0000313|Ensembl:ENSFCAP00000012776}; TaxID=9685 species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Felis.;" source="Felis catus (Cat) (Felis silvestris catus).;"
SCNpilot_expt_500_bf_scaffold_3132_8
Callorhinchus milii, Callorhinchus, Chimaeriformes, Holocephali, Chordata, Metazoa

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5020..5247
DNA (228bp) protein (76aa)
PREDICTED: LOW QUALITY PROTEIN: regulation of nuclear pre-mRNA domain-containing protein 1B n=1 Tax=Latimeria chalumnae RepID=UPI0003C14F35
Regulation of nuclear pre-mRNA domain-containing 1A {ECO:0000313|EMBL:AFP02419.1}; TaxID=7868 species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus.;" source="Callorhinchus milii (Ghost shark).;"
hypothetical protein; K15559 regulator of Ty1 transposition protein 103
SCNpilot_expt_500_bf_scaffold_3132_9
Ophiophagus hannah, Ophiophagus, Squamata, Chordata, Metazoa

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5261..5485
DNA (225bp) protein (75aa)
Regulation of nuclear pre-mRNA domain-containing protein 1A n=1 Tax=Ophiophagus hannah RepID=V8NKR9_OPHHA
regulation of nuclear pre-mRNA domain-containing protein 1A-like
Regulation of nuclear pre-mRNA domain-containing protein 1A {ECO:0000313|EMBL:ETE62655.1}; TaxID=8665 species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Elapidae; Elapinae; Ophiophagus.;" source="Ophiophagus hannah (King cobra) (Naja hannah).;"
SCNpilot_expt_500_bf_scaffold_3132_10
unknown

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5527..5823
DNA (297bp) protein (99aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3132_11
Arion vulgaris, Arion, Gastropoda, Mollusca, Metazoa

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5954..6226
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Lottia gigantea RepID=V3ZKZ2_LOTGI
Uncharacterized protein {ECO:0000313|EMBL:CEK52413.1}; TaxID=1028688 species="Eukaryota; Metazoa; Lophotrochozoa; Mollusca; Gastropoda; Heterobranchia; Euthyneura; Panpulmonata; Eupulmonata; Stylommatophora; Sigmurethra; Arionoidea; Arionidae; Arion.;" source="Arion vulgaris.;"
hypothetical protein; K15559 regulator of Ty1 transposition protein 103
SCNpilot_expt_500_bf_scaffold_3132_12
unknown

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comp(6513..6668)
DNA (156bp) protein (52aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3132_13
Daphnia pulex, Daphnia, Diplostraca, Phyllopoda, Arthropoda, Metazoa

Not on your lists

comp(6704..6892)
DNA (189bp) protein (63aa)
Putative uncharacterized protein n=1 Tax=Daphnia pulex RepID=E9G3C4_DAPPU
Putative uncharacterized protein {ECO:0000313|EMBL:EFX85747.1}; TaxID=6669 species="Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Branchiopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia.;" source="Daphnia pulex (Water flea).;"
EXOC6; exocyst complex component 6
SCNpilot_expt_500_bf_scaffold_3132_14
unknown

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comp(7378..7518)
DNA (141bp) protein (47aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3132_15
unknown

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comp(7542..7718)
DNA (177bp) protein (59aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3132_16
unknown

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comp(7866..8018)
DNA (153bp) protein (51aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3132_17
Meleagris gallopavo, Meleagris, Galliformes, Aves, Chordata, Metazoa

Not on your lists

comp(8380..8778)
DNA (399bp) protein (133aa)
Uncharacterized protein (Fragment) n=1 Tax=Meleagris gallopavo RepID=G1NKU0_MELGA
EXOC6B, SEC15L2; exocyst complex component 6B
Uncharacterized protein {ECO:0000313|Ensembl:ENSMGAP00000014076}; Flags: Fragment;; TaxID=9103 species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Meleagridinae; Meleagris.;" source="Meleagris gallopavo (Common turkey).;"
SCNpilot_expt_500_bf_scaffold_3132_18
Astyanax mexicanus, Astyanax, Characiformes, Neopterygii, Chordata, Metazoa

Not on your lists

comp(8807..9235)
DNA (429bp) protein (143aa)
PREDICTED: exocyst complex component 6B-like n=1 Tax=Ciona intestinalis RepID=UPI0002B8DEAE
Uncharacterized protein {ECO:0000313|Ensembl:ENSAMXP00000012287}; TaxID=7994 species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Characidae incertae sedis; Astyanax clade; Astyanax.;" source="Astyanax mexicanus (Blind cave fish) (Astyanax fasciatus mexicanus).;"
similar to Exocyst complex component 6B
SCNpilot_expt_500_bf_scaffold_3132_19
unknown

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comp(9239..9454)
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3132_20
Dendroctonus ponderosae, Dendroctonus, Coleoptera, Neoptera, Arthropoda, Metazoa

Not on your lists

comp(9472..9843)
DNA (372bp) protein (124aa)
Uncharacterized protein (Fragment) n=2 Tax=Dendroctonus ponderosae RepID=N6U7A6_DENPD
Uncharacterized protein {ECO:0000313|EMBL:ENN83102.1, ECO:0000313|EnsemblMetazoa:ENN83102}; Flags: Fragment;; TaxID=77166 species="Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Curculionidae; Scolytinae; Dendroctonus.;" source="Dendroctonus ponderosae (Mountain pine beetle).;"
NV14232; exocyst complex component 6B-like
SCNpilot_expt_500_bf_scaffold_3132_21
Dendroctonus ponderosae, Dendroctonus, Coleoptera, Neoptera, Arthropoda, Metazoa

Not on your lists

comp(10694..10924)
DNA (231bp) protein (77aa)
Uncharacterized protein (Fragment) n=1 Tax=Dendroctonus ponderosae RepID=N6UF55_DENPD
Uncharacterized protein {ECO:0000313|EMBL:AEE62325.1}; TaxID=77166 species="Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Curculionidae; Scolytinae; Dendroctonus.;" source="Dendroctonus ponderosae (Mountain pine beetle).;"
F-actin-capping protein subunit alpha-like
SCNpilot_expt_500_bf_scaffold_3132_22
unknown

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comp(11246..11344)
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3132_23
Amblyomma triste, Amblyomma, Ixodida, Acari, Arthropoda, Metazoa

Not on your lists

comp(11408..12160)
DNA (753bp) protein (251aa)
RNA methyltransferase-like protein 1 n=1 Tax=Acromyrmex echinatior RepID=F4W7H4_ACREC
Putative spou rrna methylase family protein {ECO:0000313|EMBL:JAC31622.1}; Flags: Fragment;; TaxID=251400 species="Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Amblyomminae; Amblyomma.;" source="Amblyomma triste.;"
Rnmtl1; RNA methyltransferase like 1
SCNpilot_expt_500_bf_scaffold_3132_24
unknown

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comp(12284..12433)
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3132_25
unknown

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comp(12493..12813)
DNA (321bp) protein (107aa)

This feature has no annotations

Displaying 25 items

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