ggKbase | organisms

Consensus taxonomy: Microbacterium → Actinomycetales → Actinobacteridae → Actinobacteria → Bacteria

Metagenomic Context

Parent: SCNpilot_expt_500_bf_step10_UNK

Properties

Avg. coverage: 5.38 Longest contig: 37.42 Kbp Bin length: 1.76 Mbp GC content: 69.06 %

Contigs count: 498 Features count: 2052 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 11 / 55 BSCG 15 / 51 MC: 1 ASCG 9 / 38 MC: 1

Displaying items 351-400 of 498 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
SCNpilot_expt_500_bf_scaffold_23963 Species: Streptomyces coelicoflavus (50%)	2	1490 bp	64.16	3.69	96.64
SCNpilot_expt_500_bf_scaffold_12478 Species: Microbacterium hominis (100%)	2	3323 bp	69.27	4.89	82.97
SCNpilot_expt_500_bf_scaffold_27068 Species: Microbacterium sp. TS-1 (50%)	2	1328 bp	68.75	3.39	97.59
SCNpilot_expt_500_bf_scaffold_20372 Species: Microbacterium sp. MRS-1 (50%)	2	1735 bp	70.26	5.62	99.25
SCNpilot_expt_500_bf_scaffold_21728 Species: BJP_08E140C01_10KDA_Microbacterium_68_10 (50%)	2	1634 bp	70.44	3.67	99.51
SCNpilot_expt_500_bf_scaffold_25368 Species: Microbacterium sp. CH12i (50%)	2	1409 bp	63.17	4.08	95.60
SCNpilot_expt_500_bf_scaffold_32146 Species: Microbacterium sp. MRS-1 (50%)	2	1086 bp	66.57	6.45	93.92
SCNpilot_expt_500_bf_scaffold_32915 Species: Microbacterium hominis (50%)	2	1793 bp	71.56	4.32	72.11
SCNpilot_expt_500_bf_scaffold_19004 Species: Microbacterium sp. TS-1 (50%)	2	2376 bp	65.24	4.73	100.00
SCNpilot_expt_500_bf_scaffold_20382 Species: Microbacterium sp. MRS-1 (50%)	2	1734 bp	65.63	3.89	80.97
SCNpilot_expt_500_bf_scaffold_31537 Species: Microbacterium sp. MRS-1 (50%)	2	1760 bp	68.75	5.11	50.97
SCNpilot_expt_500_bf_scaffold_22962 Species: Microbacterium hominis (50%)	2	1550 bp	71.10	4.52	100.07
SCNpilot_expt_500_bf_scaffold_19522 Species: Microbacterium laevaniformans (100%)	2	1807 bp	68.46	5.40	85.17
SCNpilot_expt_500_bf_scaffold_17076 Species: Microbacterium sp. TS-1 (50%)	2	2063 bp	78.19	5.33	90.89
SCNpilot_expt_500_bf_scaffold_16150 Species: Microbacterium laevaniformans (100%)	2	2183 bp	67.11	4.01	90.15
SCNpilot_expt_500_bf_scaffold_22456 Species: Microbacterium sp. MRS-1 (100%)	2	1584 bp	68.18	4.26	99.62
SCNpilot_expt_500_bf_scaffold_21234 Species: Microbacterium oleivorans (50%)	2	1668 bp	69.06	4.95	98.02
SCNpilot_expt_500_bf_scaffold_30286 Species: Microbacterium sp. oral taxon 186 (50%)	2	1181 bp	71.55	4.45	74.94
SCNpilot_expt_500_bf_scaffold_31038 Species: Microbacterium laevaniformans (50%)	2	1145 bp	70.83	3.49	90.13
SCNpilot_expt_500_bf_scaffold_20143 Species: Microbacterium sp. MRS-1 (100%)	2	1754 bp	65.91	3.85	82.10
SCNpilot_expt_500_bf_scaffold_27865 Species: Microbacterium laevaniformans (100%)	2	1293 bp	65.89	4.45	97.68
SCNpilot_expt_500_bf_scaffold_17089 Species: Microbacterium hominis (50%)	2	2061 bp	68.80	15.41	99.42
SCNpilot_expt_500_bf_scaffold_22723 Species: Micrococcus luteus (50%)	2	1565 bp	63.07	3.35	90.86
SCNpilot_expt_500_bf_scaffold_19283 Species: Microbacterium sp. oral taxon 186 (50%)	2	2340 bp	69.02	4.70	88.08
SCNpilot_expt_500_bf_scaffold_17605 Species: Microbacterium sp. TS-1 (50%)	2	2001 bp	72.51	6.87	95.95
SCNpilot_expt_500_bf_scaffold_24482 Species: Microbacterium hominis (100%)	2	1462 bp	73.53	5.47	100.14
SCNpilot_expt_500_bf_scaffold_19552 Species: Microbacterium sp. oral taxon 186 (50%)	2	1805 bp	70.36	3.88	90.25
SCNpilot_expt_500_bf_scaffold_19043 Species: Microbacterium ginsengisoli (100%)	2	1851 bp	70.56	7.16	99.84
SCNpilot_expt_500_bf_scaffold_20680 Species: Microbacterium hominis (50%)	2	1710 bp	67.95	5.56	99.82
SCNpilot_expt_500_bf_scaffold_20426 Species: Microbacterium hominis (50%)	2	1731 bp	69.09	4.33	60.66
SCNpilot_expt_500_bf_scaffold_16186 Species: Paenibacillus macerans (100%)	2	2180 bp	67.06	3.56	95.64
SCNpilot_expt_500_bf_scaffold_19052 Species: Microbacterium laevaniformans (100%)	2	1850 bp	69.46	4.32	89.84
SCNpilot_expt_500_bf_scaffold_29590 Species: Microbacterium sp. oral taxon 186 (50%)	2	1213 bp	67.68	4.33	72.47
SCNpilot_expt_500_bf_scaffold_19054 Species: Microbacterium hominis (50%)	2	1850 bp	72.05	3.78	88.05
SCNpilot_expt_500_bf_scaffold_15607 Species: Microbacterium laevaniformans (50%)	2	2256 bp	72.25	4.43	95.21
SCNpilot_expt_500_bf_scaffold_32968 Species: Microbacterium hominis (100%)	2	1045 bp	72.15	4.78	89.57
SCNpilot_expt_500_bf_scaffold_21017 Species: Arthrobacter phenanthrenivorans (50%)	2	1684 bp	65.91	5.05	87.47
SCNpilot_expt_500_bf_scaffold_30833 Species: Microbacterium hominis (100%)	2	1154 bp	70.54	4.98	70.97
SCNpilot_expt_500_bf_scaffold_7417 Species: Microbacterium oleivorans (50%)	2	4290 bp	72.84	5.65	99.86
SCNpilot_expt_500_bf_scaffold_29082 Species: Microbacterium hominis (50%)	2	1868 bp	69.38	5.89	40.63
SCNpilot_expt_500_bf_scaffold_20179 Species: Microbacterium laevaniformans (50%)	2	1750 bp	68.86	5.57	85.03
SCNpilot_expt_500_bf_scaffold_31076 Species: Microbacterium hominis (50%)	2	1143 bp	65.70	3.72	87.14
SCNpilot_expt_500_bf_scaffold_33098 Species: Microbacterium sp. oral taxon 186 (50%)	2	1038 bp	74.47	4.82	88.44
SCNpilot_expt_500_bf_scaffold_20700 Species: Microbacterium sp. oral taxon 186 (50%)	2	1708 bp	69.09	4.98	95.02
SCNpilot_expt_500_bf_scaffold_16975 Species: Microbacterium hominis (100%)	2	2076 bp	71.58	4.34	92.63
SCNpilot_expt_500_bf_scaffold_33361 Species: Microbacterium laevaniformans (50%)	2	1025 bp	65.27	3.17	81.66
SCNpilot_expt_500_bf_scaffold_18938 Species: Microbacterium sp. MRS-1 (50%)	2	1861 bp	68.78	4.16	90.76
SCNpilot_expt_500_bf_scaffold_31347 Species: Microbacterium sp. oral taxon 186 (100%)	2	1129 bp	67.94	5.31	94.60
SCNpilot_expt_500_bf_scaffold_23284 Species: Kineosphaera limosa (50%)	2	1529 bp	70.50	4.58	99.87
SCNpilot_expt_500_bf_scaffold_19845 Species: Microbacterium sp. MRS-1 (50%)	2	2336 bp	70.38	4.28	94.52

Displaying items 351-400 of 498 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

Warning! This will delete the current organism (SCNpilot_P_inoc_Microbacterium_69_20) and add all its contigs / scaffolds to the organism you choose below

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SCNpilot_P_inoc_Microbacterium_69_20

SCNPILOT_EXPT_500_BF_STEP10_Microbacterium_69_5

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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