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SCNpilot_P_inoc_Microbacterium_69_20

SCNPILOT_EXPT_500_BF_STEP10_Microbacterium_69_5
In projects: SCNPILOT_EXPT_500_BF_STEP10

Consensus taxonomy: Microbacterium  →  Actinomycetales  →  Actinobacteridae  →  Actinobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_expt_500_bf_step10_UNK

Properties

Avg. coverage: 5.38 Longest contig: 37.42 Kbp Bin length: 1.76 Mbp GC content: 69.06 %
Contigs count: 498 Features count: 2052 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 11 / 55 BSCG 15 / 51 MC: 1 ASCG 9 / 38 MC: 1
Displaying items 401-450 of 498 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_500_bf_scaffold_33621
Species: Microbacterium testaceum (50%)
2 1013 bp 76.60 3.70 96.84
SCNpilot_expt_500_bf_scaffold_23801
Species: Agreia bicolorata (50%)
2 2466 bp 66.95 4.06 99.63
SCNpilot_expt_500_bf_scaffold_14173
Species: Cellulomonas flavigena (50%)
2 2479 bp 72.00 6.05 92.34
SCNpilot_expt_500_bf_scaffold_29110
Species: Microbacterium mangrovi (100%)
2 1235 bp 69.39 3.85 76.52
SCNpilot_expt_500_bf_scaffold_12062
Species: Marinobacter adhaerens (100%)
2 2867 bp 69.55 5.06 99.41
SCNpilot_expt_500_bf_scaffold_35087
Species: BJP_08E140C01_10KDA_Microbacterium_68_10 (50%)
2 1793 bp 61.29 3.76 78.81
SCNpilot_expt_500_bf_scaffold_22530
Species: Microbacterium oleivorans (50%)
2 1578 bp 70.72 4.59 76.05
SCNpilot_expt_500_bf_scaffold_17159
Species: Sanguibacter keddieii (50%)
2 2052 bp 69.54 3.90 92.69
SCNpilot_expt_500_bf_scaffold_28777
Species: Microbacterium testaceum (50%)
2 1249 bp 71.18 5.20 90.79
SCNpilot_expt_500_bf_scaffold_24033
Species: Microbacterium ginsengisoli (50%)
2 1486 bp 75.10 3.36 96.90
SCNpilot_expt_500_bf_scaffold_25721
Species: Microbacterium sp. MRS-1 (50%)
2 1391 bp 71.39 4.67 95.11
SCNpilot_expt_500_bf_scaffold_26598
Species: Microbacterium hominis (100%)
2 1350 bp 66.00 3.52 99.78
SCNpilot_expt_500_bf_scaffold_33390
Species: Microbacterium ginsengisoli (100%)
2 1024 bp 62.40 5.13 78.52
SCNpilot_expt_500_bf_scaffold_22287
Species: Microbacterium maritypicum (50%)
2 1595 bp 72.79 3.45 100.06
SCNpilot_expt_500_bf_scaffold_31122 2 1141 bp 64.59 3.72 78.09
SCNpilot_expt_500_bf_scaffold_25730
Species: Bacillus sp. EGD-AK10 (50%)
2 1391 bp 67.36 4.13 79.80
SCNpilot_expt_500_bf_scaffold_21068
Species: Microbacterium hominis (50%)
2 1680 bp 70.06 3.87 100.00
SCNpilot_expt_500_bf_scaffold_29645
Species: Microbacterium oleivorans (50%)
2 1210 bp 69.92 7.02 93.72
SCNpilot_expt_500_bf_scaffold_12597
Species: Microbacterium hominis (50%)
2 2759 bp 67.60 4.89 98.30
SCNpilot_expt_500_bf_scaffold_15408
Species: Microbacterium sp. oral taxon 186 (50%)
2 2912 bp 66.69 3.09 72.73
SCNpilot_expt_500_bf_scaffold_17180
Species: Microbacterium hominis (50%)
2 2050 bp 71.37 4.63 93.22
SCNpilot_expt_500_bf_scaffold_13171
Species: marine actinobacterium PHSC20C1 (100%)
2 2661 bp 67.16 3.57 99.89
SCNpilot_expt_500_bf_scaffold_22310
Species: Mesorhizobium sp. LSHC420B00 (50%)
2 1593 bp 64.85 3.45 92.84
SCNpilot_expt_500_bf_scaffold_29151
Species: Microbacterium foliorum (50%)
2 1233 bp 67.72 5.47 89.29
SCNpilot_expt_500_bf_scaffold_24576
Species: Leifsonia aquatica (50%)
2 1456 bp 64.22 5.15 86.54
SCNpilot_expt_500_bf_scaffold_23337
Species: Leucobacter sp. UCD-THU (50%)
2 1526 bp 68.61 4.59 79.42
SCNpilot_expt_500_bf_scaffold_36360 2 1819 bp 57.83 3.44 57.39
SCNpilot_expt_500_bf_scaffold_16011
Species: Microbacterium azadirachtae (50%)
2 3282 bp 66.18 4.95 53.66
SCNpilot_expt_500_bf_scaffold_20508
Species: Microbacterium azadirachtae (50%)
2 1723 bp 67.67 4.21 100.12
SCNpilot_expt_500_bf_scaffold_27718
Species: Microbacterium sp. MRS-1 (50%)
2 1300 bp 70.92 5.19 100.15
SCNpilot_expt_500_bf_scaffold_23600
Species: Microbacterium sp. C448 (100%)
2 1512 bp 73.68 5.29 100.20
SCNpilot_expt_500_bf_scaffold_11033
Species: marine actinobacterium PHSC20C1 (100%)
2 3685 bp 65.94 5.02 99.97
SCNpilot_expt_500_bf_scaffold_20004
Species: Microbacterium sp. oral taxon 186 (50%)
2 1764 bp 73.58 5.24 95.92
SCNpilot_expt_500_bf_scaffold_13194
Species: Microbacterium sp. MRS-1 (50%)
2 2655 bp 70.02 5.84 94.46
SCNpilot_expt_500_bf_scaffold_46595
Species: Microlunatus phosphovorus (50%)
2 1254 bp 66.83 3.19 87.32
SCNpilot_expt_500_bf_scaffold_10139
Species: Microbacterium laevaniformans (100%)
2 3359 bp 71.96 4.76 94.22
SCNpilot_expt_500_bf_scaffold_26136
Species: Microbacterium sp. MRS-1 (100%)
2 1371 bp 66.23 4.56 99.78
SCNpilot_expt_500_bf_scaffold_30162
Species: marine actinobacterium PHSC20C1 (100%)
2 1187 bp 66.72 4.42 99.83
SCNpilot_expt_500_bf_scaffold_27227
Species: Microbacterium sp. TS-1 (50%)
2 1321 bp 69.87 3.97 78.35
SCNpilot_expt_500_bf_scaffold_23875
Species: Microbacterium sp. oral taxon 186 (50%)
2 2083 bp 70.48 4.80 97.50
SCNpilot_expt_500_bf_scaffold_25013
Species: Microbacterium hominis (50%)
2 2161 bp 70.34 3.70 60.39
SCNpilot_expt_500_bf_scaffold_24608
Species: Microbacterium oleivorans (100%)
2 2359 bp 60.92 3.60 54.81
SCNpilot_expt_500_bf_scaffold_31437
Species: Microbacterium sp. TS-1 (50%)
2 1125 bp 69.69 4.22 70.13
SCNpilot_expt_500_bf_scaffold_16302
Species: Microbacterium ginsengisoli (100%)
2 2165 bp 69.65 9.35 100.74
SCNpilot_expt_500_bf_scaffold_24616
Species: Microbacterium laevaniformans (50%)
2 1453 bp 64.90 3.10 86.72
SCNpilot_expt_500_bf_scaffold_33713
Species: Microbacterium sp. oral taxon 186 (50%)
2 1009 bp 67.29 2.97 81.76
SCNpilot_expt_500_bf_scaffold_32827
Species: Tetrasphaera australiensis (50%)
2 1051 bp 66.51 5.00 91.91
SCNpilot_expt_500_bf_scaffold_33204
Species: Arthrobacter sp. FB24 (50%)
2 1033 bp 65.25 4.36 100.48
SCNpilot_expt_500_bf_scaffold_29197
Species: Sporothrix schenckii (50%)
2 1231 bp 70.51 5.48 70.67
SCNpilot_expt_500_bf_scaffold_18526
Species: Microbacterium oxydans (50%)
2 1901 bp 73.01 3.55 86.32
Displaying items 401-450 of 498 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.