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SCNpilot_expt_500_bf_scaffold_426

Search features with annotation key words

Displaying items 1-30 of 119 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_426_1
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2..2383
DNA (2382bp) protein (794aa)
cell division protein FtsK n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036201DE
Cell divisionftsk/spoiiie {ECO:0000313|EMBL:GAD20600.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
DNA translocase FtsK; K03466 DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
SCNpilot_expt_500_bf_scaffold_426_2
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2435..2686)
DNA (252bp) protein (84aa)
ferredoxin n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI0002E7CE0A
ferredoxin
Ferredoxin {ECO:0000313|EMBL:ABM96178.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
SCNpilot_expt_500_bf_scaffold_426_3
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2752..3741
DNA (990bp) protein (330aa)
Inner membrane ABC transporter permease protein yliC n=1 Tax=Comamonas testosteroni ATCC 11996 RepID=H1RLM6_COMTE
ABC transporter permease {ECO:0000313|EMBL:KGH32018.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
ABC transporter permease; K02033 peptide/nickel transport system permease protein
SCNpilot_expt_500_bf_scaffold_426_4

Not on your lists

3916..4158
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DZ04_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD99008.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_expt_500_bf_scaffold_426_5

Not on your lists

4118..4819
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DZ04_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:EKD99008.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
transposase
SCNpilot_expt_500_bf_scaffold_426_6
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5209..5715
DNA (507bp) protein (169aa)
ABC transporter permease n=1 Tax=Comamonas sp. B-9 RepID=UPI000395A343
binding-protein-dependent transport systems inner membrane component; K02034 peptide/nickel transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABM55928.1}; Flags: Precursor;; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_expt_500_bf_scaffold_426_7
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5759..6025
DNA (267bp) protein (89aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037F2C8E
Uncharacterized protein {ECO:0000313|EMBL:GAD24081.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCNpilot_expt_500_bf_scaffold_426_8
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6031..6534
DNA (504bp) protein (168aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036DDBC9
PIN domain-containing protein; K07065
SCNpilot_expt_500_bf_scaffold_426_9
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6805..7815
DNA (1011bp) protein (337aa)
Oligopeptide/dipeptide ABC transporter ATPase n=1 Tax=Acidovorax sp. NO-1 RepID=H0BYD6_9BURK
ABC transporter {ECO:0000313|EMBL:KJA09919.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
dipeptide/oligopeptide ABC transporter; K02031 peptide/nickel transport system ATP-binding protein rbh
SCNpilot_expt_500_bf_scaffold_426_10
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7815..8633
DNA (819bp) protein (273aa)
Candidate ABC type dipeptide/oligopeptide transport system, ATP-binding component n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XYT2_RAMTT
dipeptide/oligopeptide ABC transporter; K02032 peptide/nickel transport system ATP-binding protein
Candidate ABC type dipeptide/oligopeptide transport system, ATP-binding component {ECO:0000313|EMBL:AEG94449.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_expt_500_bf_scaffold_426_11
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8692..10179
DNA (1488bp) protein (496aa)
ABC transporter substrate-binding protein n=1 Tax=Curvibacter lanceolatus RepID=UPI00037C6A20
ABC transporter substrate-binding protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
SCNpilot_expt_500_bf_scaffold_426_12
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10255..11679
DNA (1425bp) protein (475aa)
amidase (EC:3.5.1.4)
UPI0003D3D79D related cluster n=1 Tax=unknown RepID=UPI0003D3D79D
Amidase {ECO:0000313|EMBL:GAD24086.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCNpilot_expt_500_bf_scaffold_426_13
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11731..12594
DNA (864bp) protein (288aa)
PHP domain-containing protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BTT5_9BURK
PHP domain-containing protein {ECO:0000313|EMBL:EHL24351.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
PHP domain-containing protein; K07053 rbh
SCNpilot_expt_500_bf_scaffold_426_14
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12660..13283
DNA (624bp) protein (208aa)
translation factor Sua5 n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI0003045DAC rbh
Sua5/YciO/YrdC/YwlC family protein {ECO:0000313|EMBL:EIK90520.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
Sua5/YciO/YrdC/YwlC family protein; K07566 tRNA threonylcarbamoyladenosine biosynthesis protein
SCNpilot_expt_500_bf_scaffold_426_15
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13323..13991
DNA (669bp) protein (223aa)
Peptidase M50 n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12ET6_POLSJ rbh
peptidase M50 rbh
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
SCNpilot_expt_500_bf_scaffold_426_16
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13996..15309
DNA (1314bp) protein (438aa)
tryptophanyl-tRNA synthetase (EC:6.1.1.2); K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2]
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
Tryptophan--tRNA ligase n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TTH0_ACIAC
SCNpilot_expt_500_bf_scaffold_426_17
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15416..16021
DNA (606bp) protein (202aa)
Candidate response regulator, NarL n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y089_RAMTT
response regulator NarL
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_expt_500_bf_scaffold_426_18
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15963..17378)
DNA (1416bp) protein (472aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
Candidate histidine kinase, classic n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y088_RAMTT
histidine kinase
SCNpilot_expt_500_bf_scaffold_426_19
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17391..18452)
DNA (1062bp) protein (354aa)
chorismate synthase (EC:4.2.3.5); K01736 chorismate synthase [EC:4.2.3.5]
chorismate synthase n=1 Tax=Brachymonas chironomi RepID=UPI0003763ED0
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCNpilot_expt_500_bf_scaffold_426_20
Curvibacter putative symbiont of Hydra magnipapillata, Curvibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(18586..19053)
DNA (468bp) protein (156aa)
Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YA06_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:CBA28924.1}; TaxID=667019 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Curvibacter.;" source="Curvibacter putative symbiont of Hydra magnipapillata.;"
XRE family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_426_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19163..20473
DNA (1311bp) protein (437aa)
O-acetylhomoserine (thiol)-lyase (EC:2.5.1.49)
O-acetylhomoserine (Thiol)-lyase {ECO:0000313|EMBL:AGU48876.1}; EC=2.5.1.49 {ECO:0000313|EMBL:AGU48876.1};; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
O-acetylhomoserine (Thiol)-lyase n=1 Tax=Variovorax paradoxus B4 RepID=T1X8R4_VARPD
SCNpilot_expt_500_bf_scaffold_426_22
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20476..21282
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y481_RAMTT rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEG92546.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_expt_500_bf_scaffold_426_23
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21371..22276)
DNA (906bp) protein (302aa)
UPF0042 nucleotide-binding protein Q5W_4229 id=1274876 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
Nucleotide-binding protein Y695_03759 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
P-loop-containing kinase; K06958 UPF0042 nucleotide-binding protein
SCNpilot_expt_500_bf_scaffold_426_24
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22273..22752)
DNA (480bp) protein (160aa)
DNA repair protein RecN n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KPL4_9BURK
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=1458275 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis str. Niagara R.;"
recN; DNA repair ATPase; K03631 DNA repair protein RecN (Recombination protein N)
SCNpilot_expt_500_bf_scaffold_426_25
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22695..23873)
DNA (1179bp) protein (393aa)
DNA repair protein RecN n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XYR6_RAMTT
recN; DNA repair ATPase; K03631 DNA repair protein RecN (Recombination protein N)
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_expt_500_bf_scaffold_426_26
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23877..24773)
DNA (897bp) protein (299aa)
ATP-NAD/AcoX kinase; K00858 NAD+ kinase [EC:2.7.1.23]
NAD kinase {ECO:0000255|HAMAP-Rule:MF_00361}; EC=2.7.1.23 {ECO:0000255|HAMAP-Rule:MF_00361};; ATP-dependent NAD kinase {ECO:0000255|HAMAP-Rule:MF_00361}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=PPNK_ACIAC
SCNpilot_expt_500_bf_scaffold_426_27
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24801..25844
DNA (1044bp) protein (348aa)
HrcA family transcriptional regulator n=1 Tax=Acidovorax radicis RepID=UPI0002377470
heat-inducible transcription repressor HrcA
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_expt_500_bf_scaffold_426_28
unknown

Not on your lists

comp(26044..26250)
DNA (207bp) protein (69aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_426_29
unknown

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comp(26987..27679)
DNA (693bp) protein (231aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_426_30
unknown

Not on your lists

comp(27701..27967)
DNA (267bp) protein (89aa)

This feature has no annotations

Displaying items 1-30 of 119 in total

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