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SCNpilot_expt_500_bf_scaffold_612

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_612_1
CG_Rhodof_01, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(151..1029)
DNA (879bp) protein (293aa)
hypothetical protein n=1 Tax=Brachymonas chironomi RepID=UPI0003672B36 rbh
hypothetical protein
Tax=CG_Rhodof_01
SCNpilot_expt_500_bf_scaffold_612_2
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1026..1640)
DNA (615bp) protein (205aa)
Uncharacterized protein {ECO:0000313|EMBL:AIJ44737.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
SCNpilot_expt_500_bf_scaffold_612_3
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1651..2892)
DNA (1242bp) protein (414aa)
phospholipase n=1 Tax=Comamonas sp. B-9 RepID=UPI000395C522
phospholipase A1
Phospholipase A1 {ECO:0000313|EMBL:AFU48014.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_500_bf_scaffold_612_4
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3032..7114)
DNA (4083bp) protein (1361aa)
Amino acid adenylation n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47JP8_DECAR rbh
Peptide synthetase {ECO:0000313|EMBL:KGH31713.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
amino acid adenylation protein rbh
SCNpilot_expt_500_bf_scaffold_612_5
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7261..7707
DNA (447bp) protein (149aa)
Transmembrane pair domain protein n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TIM0_ACIAC
transmembrane pair domain-containing protein
Transmembrane pair domain protein {ECO:0000313|EMBL:ABM30808.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
SCNpilot_expt_500_bf_scaffold_612_6
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7720..8925
DNA (1206bp) protein (402aa)
Threonine dehydratase {ECO:0000313|EMBL:EIK92930.1}; EC=4.3.1.19 {ECO:0000313|EMBL:EIK92930.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
threonine dehydratase; K01754 threonine dehydratase [EC:4.3.1.19]
Threonine dehydratase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MUP0_9BURK
SCNpilot_expt_500_bf_scaffold_612_7
unknown

Not on your lists

8983..9198
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_612_8
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9200..9985
DNA (786bp) protein (262aa)
Putative manganese transport system, ATP-asa protein id=1262461 bin=GWE1_Burkholderiales_65_30 species=Azoarcus sp. genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
ABC transporter; K02074 zinc/manganese transport system ATP-binding protein
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
SCNpilot_expt_500_bf_scaffold_612_9
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9982..10878
DNA (897bp) protein (299aa)
ABC superfamily ATP binding cassette transporter, membrane protein id=1262460 bin=GWE1_Burkholderiales_65_30 species=Lautropia mirabilis genus=Lautropia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
ABC transporter permease; K02075 zinc/manganese transport system permease protein rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCNpilot_expt_500_bf_scaffold_612_10
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11000..11884
DNA (885bp) protein (295aa)
Periplasmic solute binding protein id=1262459 bin=GWE1_Burkholderiales_65_30 species=Xanthobacter autotrophicus genus=Xanthobacter taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
ABC transporter substrate-binding protein; K02077 zinc/manganese transport system substrate-binding protein
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCNpilot_expt_500_bf_scaffold_612_11
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12011..14743
DNA (2733bp) protein (911aa)
methionine synthase (EC:2.1.1.13); K00548 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
Methionine synthase (B12-dependent) {ECO:0000313|EMBL:ABM40402.1}; EC=2.1.1.13 {ECO:0000313|EMBL:ABM40402.1};; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
Methionine synthase (B12-dependent) n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W2C7_ACISJ
SCNpilot_expt_500_bf_scaffold_612_12
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14760..15563)
DNA (804bp) protein (268aa)
3',5'-cyclic-nucleotide phosphodiesterase (Cyclic AMP phosphodiesterase)-like protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y283_RAMTT rbh
3',5'-cyclic-nucleotide phosphodiesterase rbh
3',5'-cyclic-nucleotide phosphodiesterase (Cyclic AMP phosphodiesterase)-like protein {ECO:0000313|EMBL:AEG94851.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_expt_500_bf_scaffold_612_13
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15581..17818)
DNA (2238bp) protein (746aa)
Putative transmembrane sensor domain protein id=1283739 bin=GWE1_Burkholderiales_65_30 species=Polaromonas sp. CF318 genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
adenylate/guanylate cyclase with chase sensor
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_500_bf_scaffold_612_14
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17986..18642)
DNA (657bp) protein (219aa)
FHA-domain-containing proteins-like protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y284_RAMTT
FHA-domain-containing proteins
FHA-domain-containing proteins-like protein {ECO:0000313|EMBL:AEG94852.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_expt_500_bf_scaffold_612_15
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18728..19519)
DNA (792bp) protein (264aa)
serine/threonine specific protein phosphatase (EC:3.1.3.16); K01090 protein phosphatase [EC:3.1.3.16]
UPI0003A9EB07 related cluster n=1 Tax=unknown RepID=UPI0003A9EB07
Serine/threonine protein phosphatase {ECO:0000313|EMBL:GAD22886.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCNpilot_expt_500_bf_scaffold_612_16
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19581..20288)
DNA (708bp) protein (236aa)
Integral membrane protein TerC n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21RG1_RHOFD rbh
integral membrane protein TerC rbh
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
SCNpilot_expt_500_bf_scaffold_612_17
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20396..21289)
DNA (894bp) protein (298aa)
Succinyl-CoA ligase [ADP-forming] subunit alpha {ECO:0000256|RuleBase:RU000699}; EC=6.2.1.5 {ECO:0000256|RuleBase:RU000699};; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
succinyl-CoA synthetase subunit alpha; K01902 succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
succinyl-CoA synthetase subsunit alpha n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037848F7
SCNpilot_expt_500_bf_scaffold_612_18
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21303..22466)
DNA (1164bp) protein (388aa)
sucC; succinyl-CoA synthetase subunit beta; K01903 succinyl-CoA synthetase beta subunit [EC:6.2.1.5] rbh
Succinyl-CoA ligase [ADP-forming] subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; EC=6.2.1.5 {ECO:0000256|HAMAP-Rule:MF_00558};; Succinyl-CoA synthetase subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
Succinyl-CoA ligase [ADP-forming] subunit beta n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y289_RAMTT rbh
SCNpilot_expt_500_bf_scaffold_612_19
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22662..23576
DNA (915bp) protein (305aa)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_01110, ECO:0000256|SAAS:SAAS00015955}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_01110};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_01110, ECO:0000256|SAAS:SAAS00015955};; N-acetyl-glutamate semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01110}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38); K00145 N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035F196C rbh
SCNpilot_expt_500_bf_scaffold_612_20
unknown

Not on your lists

comp(23843..24400)
DNA (558bp) protein (186aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_612_21
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24615..25088)
DNA (474bp) protein (158aa)
recX; RecX family regulatory protein; K03565 regulatory protein id=12550723 bin=BDI species=Ramlibacter tataouinensis genus=Ramlibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
regulatory protein RecX; K03565 regulatory protein
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
SCNpilot_expt_500_bf_scaffold_612_22
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(25281..26330)
DNA (1050bp) protein (350aa)
Protein RecA n=1 Tax=Variovorax paradoxus B4 RepID=T1XJZ3_VARPD
recA; protein RecA
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
SCNpilot_expt_500_bf_scaffold_612_23
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26473..26946
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI000370C793
MarR family transcriptional regulator
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCNpilot_expt_500_bf_scaffold_612_24
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27078..27752
DNA (675bp) protein (225aa)
Transcriptional regulatory protein tctD n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YD07_9BURK
winged helix family two component transcriptional regulator; K02483 two-component system, OmpR family, response regulator
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_expt_500_bf_scaffold_612_25
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27810..29258
DNA (1449bp) protein (483aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
hypothetical protein n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI0002D80E5E rbh
integral membrane sensor signal transduction histidine kinase
SCNpilot_expt_500_bf_scaffold_612_26
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29362..30774)
DNA (1413bp) protein (471aa)
mnmE; tRNA modification GTPase MnmE (EC:3.6.-.-)
tRNA modification GTPase TrmE n=1 Tax=Variovorax paradoxus RepID=UPI00037B2593
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_500_bf_scaffold_612_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30814..32073
DNA (1260bp) protein (420aa)
Amidohydrolase family protein n=1 Tax=Variovorax paradoxus B4 RepID=T1X4W7_VARPD rbh
amidohydrolase family protein rbh
Amidohydrolase family protein {ECO:0000313|EMBL:AGU47205.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_bf_scaffold_612_28
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32231..33481)
DNA (1251bp) protein (417aa)
ABC transporter substrate-binding protein n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI000381AB38
Extracellular solute-binding protein {ECO:0000313|EMBL:GAD21212.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
family 5 extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein
SCNpilot_expt_500_bf_scaffold_612_29
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34029..35723)
DNA (1695bp) protein (565aa)
Membrane protein insertase YidC n=2 Tax=Alicycliphilus denitrificans RepID=E8TZI7_ALIDB
membrane protein insertase, yidc/oxa1 family domain containing; K03217 preprotein translocase subunit YidC
Membrane protein insertase YidC {ECO:0000256|HAMAP-Rule:MF_01810, ECO:0000256|SAAS:SAAS00003942}; Foldase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane integrase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane protein YidC {ECO:0000256|HAMAP-Rule:MF_01810}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_500_bf_scaffold_612_30
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35720..36004)
DNA (285bp) protein (95aa)
Putative membrane protein insertion efficiency factor n=2 Tax=Delftia acidovorans RepID=S2X554_DELAC
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
hypothetical protein; K08998 hypothetical protein
Displaying items 1-30 of 33 in total

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