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SCNpilot_expt_500_bf_scaffold_671

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Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_671_1
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1333)
DNA (1332bp) protein (444aa)
butyryl-CoA dehydrogenase (EC:1.3.8.1); K00257 [EC:1.3.99.-]
Butyryl-CoA dehydrogenase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G5F9_ALIDK
Acyl-CoA dehydrogenase domain-containing protein {ECO:0000313|EMBL:ADU98443.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_500_bf_scaffold_671_2
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1378..2019)
DNA (642bp) protein (214aa)
Transcriptional regulator n=1 Tax=Polaromonas sp. CF318 RepID=J3D9A4_9BURK
TetR family transcriptional regulator
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
SCNpilot_expt_500_bf_scaffold_671_3
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2240..3127)
DNA (888bp) protein (296aa)
5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC:5.3.3.10); K01826 5-carboxymethyl-2-hydroxymuconate isomerase [EC:5.3.3.10]
ureidoglycolate lyase n=1 Tax=Curvibacter lanceolatus RepID=UPI0003798C2C
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
SCNpilot_expt_500_bf_scaffold_671_4
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3547..4194)
DNA (648bp) protein (216aa)
Division inhibitor protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BT14_9BURK
Division inhibitor protein {ECO:0000313|EMBL:EHL24508.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
slmA; division inhibitor protein
SCNpilot_expt_500_bf_scaffold_671_5
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4325..5218)
DNA (894bp) protein (298aa)
acetylglutamate kinase (EC:2.7.2.8); K00930 acetylglutamate kinase [EC:2.7.2.8] id=5080605 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
acetylglutamate kinase; K00930 acetylglutamate kinase [EC:2.7.2.8]
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCNpilot_expt_500_bf_scaffold_671_6
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5262..6374)
DNA (1113bp) protein (371aa)
Glycosyl transferase, family 4, conserved region protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TY40_ALIDB
Glycosyl transferase family protein {ECO:0000313|EMBL:GAO22218.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
glycosyl transferase family 4
SCNpilot_expt_500_bf_scaffold_671_7
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6498..7547
DNA (1050bp) protein (350aa)
Glycosyl transferase family 2 n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6AWK8_DELSC
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:KEH13515.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
SCNpilot_expt_500_bf_scaffold_671_8
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7496..10291
DNA (2796bp) protein (932aa)
Glycosyl transferase family 2 n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q472_ACIAP
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:ADX47902.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCNpilot_expt_500_bf_scaffold_671_9
Actinotalea fermentans, Actinotalea, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10301..11203
DNA (903bp) protein (301aa)
rhamnosyltransferase; K12990 rhamnosyltransferase [EC:2.4.1.-]
Rhamnosyltransferase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W3G6_ACISJ
Uncharacterized protein {ECO:0000313|EMBL:KGM14958.1}; TaxID=862422 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Actinotalea.;" source="Actinotalea fermentans ATCC 43279 = JCM 9966 = DSM 3133.;"
SCNpilot_expt_500_bf_scaffold_671_10
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11501..12391)
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2XY06_DELAC rbh
type 12 methyltransferase rbh
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_500_bf_scaffold_671_11
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12413..13681)
DNA (1269bp) protein (423aa)
Lipopolysaccharide transport system ATP-binding protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2X2G5_DELAC rbh
Lipopolysaccharide transport system ATP-binding protein {ECO:0000313|EMBL:EPD44415.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
ABC transporter-like protein
SCNpilot_expt_500_bf_scaffold_671_12
Delftia sp. Cs1-4, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13678..14481)
DNA (804bp) protein (268aa)
ABC-2 type transporter n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6AWL6_DELSC
ABC transporter; K09690 lipopolysaccharide transport system permease protein
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=742013 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. (strain Cs1-4).;"
SCNpilot_expt_500_bf_scaffold_671_13
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14535..15455)
DNA (921bp) protein (307aa)
PpiC-type peptidyl-prolyl cis-trans isomerase; K03769 peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; Flags: Precursor;; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
PpiC-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q477_ACIAP
SCNpilot_expt_500_bf_scaffold_671_14
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15715..17271)
DNA (1557bp) protein (519aa)
hypothetical protein n=1 Tax=Chryseobacterium taeanense RepID=UPI0002DBE8FC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM34689.1}; Flags: Precursor;; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
SCNpilot_expt_500_bf_scaffold_671_15
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17454..17885)
DNA (432bp) protein (144aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BSZ9_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHL24493.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_671_16
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17945..20371)
DNA (2427bp) protein (809aa)
General secretion pathway protein D n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q480_ACIAP
general secretion pathway protein D; K02453 general secretion pathway protein D
General secretion pathway protein D {ECO:0000313|EMBL:ADX47910.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCNpilot_expt_500_bf_scaffold_671_17
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20649..21401)
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T1E0_ACIDE
Uncharacterized protein {ECO:0000313|EMBL:EER61698.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_671_18
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21398..21961)
DNA (564bp) protein (188aa)
General secretion pathway protein M n=1 Tax=Acidovorax sp. NO-1 RepID=H0BSZ6_9BURK
General secretion pathway protein M {ECO:0000313|EMBL:EHL24490.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
general secretion pathway protein M; K02462 general secretion pathway protein M
SCNpilot_expt_500_bf_scaffold_671_19
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21958..23073)
DNA (1116bp) protein (372aa)
Fimbrial assembly family protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BSZ5_9BURK
Fimbrial assembly family protein {ECO:0000313|EMBL:EHL24489.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
fimbrial assembly family protein; K02461 general secretion pathway protein L
SCNpilot_expt_500_bf_scaffold_671_20
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23070..23903)
DNA (834bp) protein (278aa)
general secretion pathway protein K n=1 Tax=Comamonas sp. B-9 RepID=UPI0003957184
general secretory pathway protein K; K02460 general secretion pathway protein K
General secretory pathway protein K {ECO:0000313|EMBL:ADX47914.1}; Flags: Precursor;; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCNpilot_expt_500_bf_scaffold_671_21
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23959..24651)
DNA (693bp) protein (231aa)
General secretion pathway protein J n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WFQ8_VEREI
general secretion pathway protein J; K02459 general secretion pathway protein J
General secretion pathway protein J {ECO:0000313|EMBL:ABM56465.1}; Flags: Precursor;; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_expt_500_bf_scaffold_671_22
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24648..25073)
DNA (426bp) protein (142aa)
General secretion pathway protein I n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TUQ9_ACIAC
general secretion pathway protein I; K02458 general secretion pathway protein I
General secretion pathway protein I {ECO:0000313|EMBL:ABM34697.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
SCNpilot_expt_500_bf_scaffold_671_23
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25070..25582)
DNA (513bp) protein (171aa)
general secretion pathway protein H n=1 Tax=Acidovorax avenae RepID=UPI0002F44FCF
general secretion pathway protein H; K02457 general secretion pathway protein H
General secretion pathway protein H {ECO:0000313|EMBL:ADX47917.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCNpilot_expt_500_bf_scaffold_671_24
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25632..26069)
DNA (438bp) protein (146aa)
General secretion pathway protein G n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TUR1_ACIAC
general secretion pathway protein G; K02456 general secretion pathway protein G
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_500_bf_scaffold_671_25
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26354..27583)
DNA (1230bp) protein (410aa)
Type II secretion system protein n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TUR2_ACIAC
type II secretion system protein; K02455 general secretion pathway protein F
Type II secretion system protein {ECO:0000313|EMBL:ABM34700.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
SCNpilot_expt_500_bf_scaffold_671_26
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27624..29372)
DNA (1749bp) protein (583aa)
General secretory pathway protein E n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q490_ACIAP
general secretory pathway protein E; K02454 general secretion pathway protein E
General secretory pathway protein E {ECO:0000313|EMBL:ADX47920.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCNpilot_expt_500_bf_scaffold_671_27
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29480..30667)
DNA (1188bp) protein (396aa)
Acyltransferase 3 n=1 Tax=Pseudomonas mendocina (strain NK-01) RepID=F4DRS8_PSEMN rbh
acyltransferase 3 rbh
Acyltransferase 3 {ECO:0000313|EMBL:AEB60798.1}; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
SCNpilot_expt_500_bf_scaffold_671_28
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30664..31467)
DNA (804bp) protein (268aa)
glycosyl transferase n=1 Tax=Comamonas sp. B-9 RepID=UPI0003956D9C
glycosyl transferase family protein; K07011
Glycosyl transferase, family 2 {ECO:0000313|EMBL:ABM56998.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_expt_500_bf_scaffold_671_29
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31489..32046)
DNA (558bp) protein (186aa)
rfbC; dTDP-L-rhamnose synthetase; K01790 dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
dTDP-L-rhamnose synthetase n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XYW5_RAMTT
dTDP-L-rhamnose synthetase {ECO:0000313|EMBL:AEG91953.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_expt_500_bf_scaffold_671_30
Escherichia vulneris, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32080..32673)
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Escherichia coli UMEA 3317-1 RepID=T9JDP6_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:GAL57510.1}; TaxID=1115515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia vulneris NBRC 102420.;"
butyryltransferase
Displaying items 1-30 of 52 in total

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