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SCNpilot_expt_500_bf_scaffold_684

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Displaying items 1-30 of 58 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_684_1
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..723)
DNA (723bp) protein (241aa)
protoheme IX farnesyltransferase; K02301 protoheme IX farnesyltransferase [EC:2.5.1.-] id=12553492 bin=BDI species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
protoheme IX farnesyltransferase; K02301 protoheme IX farnesyltransferase [EC:2.5.1.-]
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
SCNpilot_expt_500_bf_scaffold_684_2
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(782..2440)
DNA (1659bp) protein (553aa)
cytochrome-c oxidase (EC:1.9.3.1); K02274 cytochrome c oxidase subunit I [EC:1.9.3.1]
Cytochrome-c oxidase n=2 Tax=Alicycliphilus denitrificans RepID=E8TQH0_ALIDB
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_500_bf_scaffold_684_3
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2454..2993)
DNA (540bp) protein (180aa)
cytochrome c oxidase subunit ii; K02275 cytochrome c oxidase subunit II [EC:1.9.3.1] id=12553494 bin=BDI species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria rbh
cytochrome c oxidase subunit ii; K02275 cytochrome c oxidase subunit II [EC:1.9.3.1]
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
SCNpilot_expt_500_bf_scaffold_684_4
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3013..3183)
DNA (171bp) protein (57aa)
hypothetical protein id=12553495 bin=BDI species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_expt_500_bf_scaffold_684_5
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3805..4356
DNA (552bp) protein (184aa)
cytochrome oxidase assembly; K02259 cytochrome c oxidase assembly protein subunit 15 id=12553496 bin=BDI species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
cytochrome oxidase assembly protein; K02259 cytochrome c oxidase assembly protein subunit 15
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_500_bf_scaffold_684_6
RBG_16_Gamma2_64_11_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4381..5997)
DNA (1617bp) protein (539aa)
cytochrome c, class I:Cytochrome d1, heme region (EC:1.7.99.1); K15864 nitrite reductase (NO-forming) / hydroxylamine reductase [EC:1.7.2.1 1.7.99.1] rbh
Nitrite reductase like c-type cytochorome NirN n=1 Tax=Desulfotignum phosphitoxidans DSM 13687 RepID=S0G0R2_9DELT rbh
Tax=RBG_16_Gamma2_64_11_curated
SCNpilot_expt_500_bf_scaffold_684_7
R_Burkholderiales_63_240, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6128..7420)
DNA (1293bp) protein (431aa)
metY; o-acetylhomoserine sulfhydrylase (EC:2.5.1.49); K01740 O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
O-acetylhomoserine aminocarboxypropyltransferase n=1 Tax=Curvibacter lanceolatus RepID=UPI00037551D4 rbh
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_63_240_curated
SCNpilot_expt_500_bf_scaffold_684_8
Delftia sp. Cs1-4, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7603..8706)
DNA (1104bp) protein (368aa)
Putative uncharacterized protein n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6AYB5_DELSC rbh
hypothetical protein rbh
Putative uncharacterized protein {ECO:0000313|EMBL:AEF90532.1}; TaxID=742013 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. (strain Cs1-4).;"
SCNpilot_expt_500_bf_scaffold_684_9
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8893..9165
DNA (273bp) protein (91aa)
Probable Fe(2+)-trafficking protein n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KR41_9BURK
hypothetical protein
Probable Fe(2+)-trafficking protein {ECO:0000256|HAMAP-Rule:MF_00686, ECO:0000256|SAAS:SAAS00073862}; TaxID=887062 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis ATCC 19624.;"
SCNpilot_expt_500_bf_scaffold_684_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9287..11284
DNA (1998bp) protein (666aa)
tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC; K15461 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
FAD-dependent cmnm(5)s(2)U34 oxidoreductase n=1 Tax=Variovorax paradoxus RepID=UPI00035C8127
tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC {ECO:0000256|HAMAP-Rule:MF_01102, ECO:0000256|SAAS:SAAS00084295}; Short=tRNA mnm(5)s(2)U biosynthesis bifunctional protein {ECO:0000256|HAMAP-Rule:MF_01102};; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_500_bf_scaffold_684_11
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11281..12177
DNA (897bp) protein (299aa)
membrane protein n=1 Tax=Caulobacter RepID=UPI00037FA6C1 rbh
hypothetical protein; K15268 O-acetylserine/cysteine efflux transporter rbh
Uncharacterized protein {ECO:0000313|EMBL:ABZ73383.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_expt_500_bf_scaffold_684_12
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12508..12780
DNA (273bp) protein (91aa)
Putative uncharacterized protein n=1 Tax=Halomonas sp. TD01 RepID=F7SR45_9GAMM
Peptidase M {ECO:0000313|EMBL:GAO22702.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein; K07043
SCNpilot_expt_500_bf_scaffold_684_13
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12862..13938)
DNA (1077bp) protein (359aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003818D07
hypothetical protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_expt_500_bf_scaffold_684_14
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13907..14317)
DNA (411bp) protein (137aa)
Putative uncharacterized protein n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TQK4_ACIAC
hypothetical protein; K14160 protein ImuA
Uncharacterized protein {ECO:0000313|EMBL:ABM33242.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
SCNpilot_expt_500_bf_scaffold_684_15
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14581..15636
DNA (1056bp) protein (352aa)
lipA; lipoic acid synthetase; K03644 lipoic acid synthetase [EC:2.8.1.8]
Lipoyl synthase {ECO:0000256|HAMAP-Rule:MF_00206}; EC=2.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00206};; Lip-syn {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoate synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoic acid synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Sulfur insertion protein LipA {ECO:0000256|HAMAP-Rule:MF_00206}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
Lipoyl synthase n=1 Tax=gamma proteobacterium HdN1 RepID=E1VJP4_9GAMM
SCNpilot_expt_500_bf_scaffold_684_16
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15743..16078
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IH18_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:ERF81804.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_684_17
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16136..16957
DNA (822bp) protein (274aa)
thyA; thymidylate synthase (EC:2.1.1.45); K00560 thymidylate synthase [EC:2.1.1.45] rbh
Thymidylate synthase {ECO:0000255|HAMAP-Rule:MF_00008}; Short=TS {ECO:0000255|HAMAP-Rule:MF_00008};; Short=TSase {ECO:0000255|HAMAP-Rule:MF_00008};; EC=2.1.1.45 {ECO:0000255|HAMAP-Rule:MF_00008};; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
Thymidylate synthase n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=TYSY_METPP rbh
SCNpilot_expt_500_bf_scaffold_684_18
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17151..18152
DNA (1002bp) protein (334aa)
UPI0003A91002 related cluster n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI0003A91002
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit {ECO:0000313|EMBL:GAD20327.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
putative acetoin:2,6-dichlorophenolindophenol oxidoreductase, subunit alpha
SCNpilot_expt_500_bf_scaffold_684_19
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18149..19180
DNA (1032bp) protein (344aa)
pdhB; pyruvate dehydrogenase E1 component subunit beta; K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037D9E05
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit {ECO:0000313|EMBL:GAD20326.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCNpilot_expt_500_bf_scaffold_684_20
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19177..19692
DNA (516bp) protein (172aa)
dihydrofolate reductase (EC:1.5.1.3); K00287 dihydrofolate reductase [EC:1.5.1.3]
Dihydrofolate reductase {ECO:0000256|PIRNR:PIRNR000194}; EC=1.5.1.3 {ECO:0000256|PIRNR:PIRNR000194};; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
Dihydrofolate reductase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TWT7_ALIDB
SCNpilot_expt_500_bf_scaffold_684_21
Burkholderia ubonensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19760..19975
DNA (216bp) protein (72aa)
hypothetical protein n=1 Tax=Burkholderia ubonensis RepID=UPI00016A676E
Uncharacterized protein {ECO:0000313|EMBL:AJX14189.1}; TaxID=1249668 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia ubonensis MSMB22.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_684_22
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19968..20576
DNA (609bp) protein (203aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00030EF3A2
Protein-tyrosine phosphatase {ECO:0000313|EMBL:ERF80262.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_684_23
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20549..21277)
DNA (729bp) protein (243aa)
ABC transporter, ATP-binding protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AIU7_AZOBR rbh
Branched-chain amino acid transport ATP-binding protein LivF {ECO:0000313|EMBL:CDM22716.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
ABC transporter, ATP-binding protein rbh
SCNpilot_expt_500_bf_scaffold_684_24
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21274..22032)
DNA (759bp) protein (253aa)
ABC transporter ATP-binding protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GXN9_PUSST
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDM22715.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
ABC transporter ATP-binding protein; K01995 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_500_bf_scaffold_684_25
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22034..23014)
DNA (981bp) protein (327aa)
ABC transporter permease n=2 Tax=Pandoraea RepID=V5UAC8_9BURK
Branched-chain amino acid transport system permease protein LivM {ECO:0000313|EMBL:CDM22714.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1
SCNpilot_expt_500_bf_scaffold_684_26
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22954..23937)
DNA (984bp) protein (328aa)
ABC transporter permease n=1 Tax=Bordetella sp. FB-8 RepID=UPI00037879BC
High-affinity branched-chain amino acid transport system permease protein LivH {ECO:0000313|EMBL:CDM22713.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1
SCNpilot_expt_500_bf_scaffold_684_27
Burkholderia multivorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23934..24854)
DNA (921bp) protein (307aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002FE7D2C rbh
Beta-lactamase {ECO:0000313|EMBL:EEE08296.1}; TaxID=513052 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia multivorans CGD2.;"
metallo-beta-lactamase superfamily protein
SCNpilot_expt_500_bf_scaffold_684_28
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24895..26058)
DNA (1164bp) protein (388aa)
Extracellular ligand-binding receptor n=1 Tax=Pandoraea sp. SD6-2 RepID=R7X203_9BURK
Extracellular ligand-binding receptor {ECO:0000313|EMBL:CDM22712.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_expt_500_bf_scaffold_684_29
Cupriavidus pinatubonensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26162..27178)
DNA (1017bp) protein (339aa)
aminocarboxymuconate-semialdehyde decarboxylase (EC:4.1.1.45); K03392 aminocarboxymuconate-semialdehyde decarboxylase [EC:4.1.1.45] rbh
Aminocarboxymuconate-semialdehyde decarboxylase {ECO:0000313|EMBL:AAZ64848.1}; EC=4.1.1.45 {ECO:0000313|EMBL:AAZ64848.1};; TaxID=264198 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) (Ralstonia; eutropha (strain JMP 134)).;"
Aminocarboxymuconate-semialdehyde decarboxylase n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q46PT6_CUPPJ rbh
SCNpilot_expt_500_bf_scaffold_684_30
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27175..27738)
DNA (564bp) protein (188aa)
3-hydroxyanthranilate 3,4-dioxygenase (EC:1.13.11.6)
hypothetical protein n=1 Tax=Oligella urethralis RepID=UPI00037392AC
3-hydroxyanthranilic acid dioxygenase {ECO:0000313|EMBL:CDM22708.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
Displaying items 1-30 of 58 in total

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