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SCNpilot_expt_500_bf_scaffold_1466

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1466_1
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

897..2264
DNA (1368bp) protein (456aa)
4Fe-4S ferredoxin, iron-sulfur binding domain protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VTU6_POLNA rbh
4Fe-4S ferredoxin rbh
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
SCNpilot_expt_500_bf_scaffold_1466_2
unknown

Not on your lists

2313..2522
DNA (210bp) protein (70aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1466_3
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2559..2831
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VTU4_POLNA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM39072.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
SCNpilot_expt_500_bf_scaffold_1466_4
unknown

Not on your lists

comp(2990..3241)
DNA (252bp) protein (84aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1466_5
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3438..5396
DNA (1959bp) protein (653aa)
DNA polymerase III subunits gamma and tau (EC:2.7.7.7); K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7] rbh
DNA polymerase III, subunits gamma and tau {ECO:0000313|EMBL:ABM42511.1}; EC=2.7.7.7 {ECO:0000313|EMBL:ABM42511.1};; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
DNA polymerase III, subunits gamma and tau n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W8D6_ACISJ rbh
SCNpilot_expt_500_bf_scaffold_1466_6
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5497..5832
DNA (336bp) protein (112aa)
hypothetical protein; K09747 hypothetical protein id=12552274 bin=BDI species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_500_bf_scaffold_1466_7
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5937..6527
DNA (591bp) protein (197aa)
recombinase RecR n=1 Tax=Acidovorax avenae RepID=UPI00030C53A7
recombination protein RecR; K06187 recombination protein RecR
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCNpilot_expt_500_bf_scaffold_1466_8
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6542..7288
DNA (747bp) protein (249aa)
silent information regulator protein sir2; K12410 NAD-dependent deacetylase [EC:3.5.1.-] rbh
NAD-dependent protein deacylase {ECO:0000256|HAMAP-Rule:MF_01121}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_01121};; Regulatory protein SIR2 homolog {ECO:0000256|HAMAP-Rule:MF_01121}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
NAD-dependent protein deacylase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TRQ1_ALIDB rbh
SCNpilot_expt_500_bf_scaffold_1466_9
unknown

Not on your lists

comp(7445..8113)
DNA (669bp) protein (223aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1466_10
unknown

Not on your lists

8172..8858
DNA (687bp) protein (229aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1466_11
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8680..9282)
DNA (603bp) protein (201aa)
chromate transporter; K07240 chromate transporter id=5083705 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
chromate transporter; K07240 chromate transporter
Tax=GWE1_Burkholderiales_65_30_curated
SCNpilot_expt_500_bf_scaffold_1466_12
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9279..9863)
DNA (585bp) protein (195aa)
chromate transporter; K07240 chromate transporter id=5083706 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
chrA; chromate transport protein, half length; K07240 chromate transporter
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_expt_500_bf_scaffold_1466_13
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9872..10225)
DNA (354bp) protein (118aa)
Arsenate reductase {ECO:0000256|RuleBase:RU362029}; EC=1.20.4.1 {ECO:0000256|RuleBase:RU362029};; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
arsenate reductase; K00537 arsenate reductase [EC:1.20.4.1]
Arsenate reductase n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6Z733_9RHOO
SCNpilot_expt_500_bf_scaffold_1466_14
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10544..11746)
DNA (1203bp) protein (401aa)
hypothetical protein id=5081145 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
hypothetical protein rbh
Tax=GWE1_Burkholderiales_65_30_curated
SCNpilot_expt_500_bf_scaffold_1466_15
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11759..12313)
DNA (555bp) protein (185aa)
hypothetical protein id=5081144 bin=GWF1_Burkholderiales_GWF1_66_17 species=Candidatus Accumulibacter phosphatis genus=Candidatus Accumulibacter taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
Tax=GWE1_Burkholderiales_65_30_curated
SCNpilot_expt_500_bf_scaffold_1466_16
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12335..12787)
DNA (453bp) protein (151aa)
Thioesterase superfamily protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MPD0_9BURK
Thioesterase superfamily protein {ECO:0000313|EMBL:EIK91070.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1466_17
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12914..13516
DNA (603bp) protein (201aa)
CHRD domain containing protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VNH8_POLNA
CHRD domain-containing protein
CHRD domain containing protein {ECO:0000313|EMBL:ABM37206.1}; Flags: Precursor;; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
SCNpilot_expt_500_bf_scaffold_1466_18
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13598..14134
DNA (537bp) protein (179aa)
CHRD n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21WA4_RHOFD
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
SCNpilot_expt_500_bf_scaffold_1466_19
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14224..16512
DNA (2289bp) protein (763aa)
UPF0313 protein Q5W_4727 n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MGQ9_9BURK
radical SAM domain-containing protein
Tax=BJP_08E140C01_Burkholderiales_65_30
SCNpilot_expt_500_bf_scaffold_1466_20
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16768..18450
DNA (1683bp) protein (561aa)
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
fhs; formate-tetrahydrofolate ligase Fhs (EC:6.3.4.3); K01938 formate--tetrahydrofolate ligase [EC:6.3.4.3] rbh
Formate--tetrahydrofolate ligase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LM33_9BURK rbh
SCNpilot_expt_500_bf_scaffold_1466_21
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18571..19137)
DNA (567bp) protein (189aa)
hypothetical protein n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI0003A0C340
Uncharacterized protein {ECO:0000313|EMBL:CDX25581.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1466_22
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19314..21365)
DNA (2052bp) protein (684aa)
Small GTP-binding protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G6Z2_ALIDK rbh
Small GTP-binding protein {ECO:0000313|EMBL:AEB83158.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
small GTP-binding protein; K02355 elongation factor G rbh
SCNpilot_expt_500_bf_scaffold_1466_23
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21473..22087
DNA (615bp) protein (205aa)
hypothetical protein n=1 Tax=Chryseobacterium taeanense RepID=UPI0002E34BED
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EPD35329.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
SCNpilot_expt_500_bf_scaffold_1466_24
unknown

Not on your lists

comp(22210..22443)
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1466_25
R_Curvibacter_63_18, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22505..23977)
DNA (1473bp) protein (491aa)
exoribonuclease II (EC:3.1.13.1); K01147 exoribonuclease II [EC:3.1.13.1] rbh
Exoribonuclease II n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21YJ8_RHOFD rbh
Tax=RIFCSPHIGHO2_12_FULL_Curvibacter_63_18_curated
SCNpilot_expt_500_bf_scaffold_1466_26
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24012..24713)
DNA (702bp) protein (234aa)
Putative membrane protein n=1 Tax=Acidovorax sp. CF316 RepID=J1ENK6_9BURK
Putative membrane protein {ECO:0000313|EMBL:EJE53836.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
colD-shock DNA-binding domain-containing protein
SCNpilot_expt_500_bf_scaffold_1466_27

Not on your lists

comp(24748..26184)
DNA (1437bp) protein (479aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium RepID=C6KUM5_9BACT rbh
Putative uncharacterized protein {ECO:0000313|EMBL:BAH89673.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
WS/DGAT/MGAT acyltransferase rbh
SCNpilot_expt_500_bf_scaffold_1466_28
Pseudohaliea rubra, Pseudohaliea, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26133..26456)
DNA (324bp) protein (108aa)
Uncharacterized protein {ECO:0000313|EMBL:KGE04049.1}; TaxID=1265313 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade; Pseudohaliea.;" source="Haliea rubra DSM 19751.;"
SCNpilot_expt_500_bf_scaffold_1466_29
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26540..27256
DNA (717bp) protein (239aa)
3-oxoacid CoA-transferase subunit A (EC:2.8.3.6); K01031 3-oxoadipate CoA-transferase, alpha subunit [EC:2.8.3.6]
3-oxoadipate CoA-transferase subunit A n=1 Tax=Curvibacter lanceolatus RepID=UPI000363B523 rbh
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
SCNpilot_expt_500_bf_scaffold_1466_30
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27272..27928
DNA (657bp) protein (219aa)
3-oxoacid CoA-transferase, B subunit {ECO:0000313|EMBL:EIK89816.1}; EC=2.8.3.8 {ECO:0000313|EMBL:EIK89816.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
3-oxoacid CoA-transferase, B subunit n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MKS6_9BURK
probable succinyl-CoA:3-ketoacid-coenzyme A transferase, mitochondrial-like
Displaying items 1-30 of 33 in total

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