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SCNpilot_expt_500_bf_scaffold_1579

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1579_1
unknown

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1..90
DNA (90bp) protein (30aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1579_2
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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87..1163
DNA (1077bp) protein (359aa)
NADH dehydrogenase (quinone) (EC:1.6.99.5); K00337 NADH-quinone oxidoreductase subunit H [EC:1.6.5.3] rbh
NADH-quinone oxidoreductase subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01350};; NADH dehydrogenase I subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; NDH-1 subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
NADH-quinone oxidoreductase subunit H n=2 Tax=Alicycliphilus denitrificans RepID=E8U1L4_ALIDB rbh
SCNpilot_expt_500_bf_scaffold_1579_3
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1178..1687
DNA (510bp) protein (170aa)
NADH dehydrogenase subunit I (EC:1.6.5.3); K00338 NADH-quinone oxidoreductase subunit I [EC:1.6.5.3] rbh
NADH dehydrogenase subunit I n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI00035C3918 rbh
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_expt_500_bf_scaffold_1579_4
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1722..2393
DNA (672bp) protein (224aa)
NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 n=1 Tax=Acidovorax sp. NO-1 RepID=H0C205_9BURK rbh
NADH:ubiquinone oxidoreductase subunit J {ECO:0000313|EMBL:KJA09307.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 rbh
SCNpilot_expt_500_bf_scaffold_1579_5
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2390..2698
DNA (309bp) protein (103aa)
NADH-ubiquinone oxidoreductase chain 4L; K00340 NADH-quinone oxidoreductase subunit K [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01456};; NADH dehydrogenase I subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; NDH-1 subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (strain DSM 14801 / SPH-1).;"
NADH-quinone oxidoreductase subunit K n=2 Tax=Delftia RepID=A9BNA4_DELAS
SCNpilot_expt_500_bf_scaffold_1579_6
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2706..4727
DNA (2022bp) protein (674aa)
proton-translocating NADH-quinone oxidoreductase subunit L (EC:1.6.99.5); K00341 NADH-quinone oxidoreductase subunit L [EC:1.6.5.3] rbh
NADH dehydrogenase subunit L {ECO:0000313|EMBL:ABM41208.1}; EC=1.6.5.3 {ECO:0000313|EMBL:ABM41208.1};; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
NADH dehydrogenase subunit L n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W4N3_ACISJ rbh
SCNpilot_expt_500_bf_scaffold_1579_7
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4746..6221
DNA (1476bp) protein (492aa)
proton-translocating NADH-quinone oxidoreductase subunit M (EC:1.6.99.5); K00342 NADH-quinone oxidoreductase subunit M [EC:1.6.5.3]
Proton-translocating NADH-quinone oxidoreductase, chain M n=1 Tax=Polaromonas sp. CF318 RepID=J2L5Q9_9BURK
Proton-translocating NADH-quinone oxidoreductase, chain M {ECO:0000313|EMBL:EJL87600.1}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
SCNpilot_expt_500_bf_scaffold_1579_8
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6232..7719
DNA (1488bp) protein (496aa)
proton-translocating NADH-quinone oxidoreductase subunit N (EC:1.6.99.5); K00343 NADH-quinone oxidoreductase subunit N [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_00445};; NADH dehydrogenase I subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; NDH-1 subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
NADH-quinone oxidoreductase subunit N n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q0J2_ACIAP
SCNpilot_expt_500_bf_scaffold_1579_9
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7722..8027
DNA (306bp) protein (102aa)
Putative transmembrane protein n=2 Tax=Comamonas testosteroni RepID=B7WRT5_COMTE
hypothetical protein
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
SCNpilot_expt_500_bf_scaffold_1579_10
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8097..8606
DNA (510bp) protein (170aa)
NUDIX hydrolase; K01515 ADP-ribose pyrophosphatase [EC:3.6.1.13]
NUDIX hydrolase n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VM75_POLNA
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_expt_500_bf_scaffold_1579_11
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8617..9105
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V500_VARPE
hypothetical protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_expt_500_bf_scaffold_1579_12
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9219..9938)
DNA (720bp) protein (240aa)
transcriptional regulator n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI000382F0D4 rbh
cAMP-binding protein {ECO:0000313|EMBL:EJE50046.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
Crp/Fnr family transcriptional regulator; K01420 CRP/FNR family transcriptional regulator, anaerobic regulatory protein rbh
SCNpilot_expt_500_bf_scaffold_1579_13
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10133..11515
DNA (1383bp) protein (461aa)
Coproporphyrinogen-III oxidase {ECO:0000256|PIRNR:PIRNR000167}; EC=1.3.99.22 {ECO:0000256|PIRNR:PIRNR000167};; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
coproporphyrinogen iii oxidase (EC:1.3.99.22); K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22] rbh
Coproporphyrinogen-III oxidase n=1 Tax=Acidovorax sp. NO-1 RepID=H0C1H9_9BURK rbh
SCNpilot_expt_500_bf_scaffold_1579_14
R_Curvibacter_63_18, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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11515..12198
DNA (684bp) protein (228aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI00031F4C95 rbh
hypothetical protein; K09792 hypothetical protein rbh
Tax=RIFCSPHIGHO2_12_FULL_Curvibacter_63_18_curated
SCNpilot_expt_500_bf_scaffold_1579_15
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(12287..13111)
DNA (825bp) protein (275aa)
Uncharacterized protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T0G2_ACIDE
Uncharacterized protein {ECO:0000313|EMBL:EER61980.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1579_16
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(13410..13745)
DNA (336bp) protein (112aa)
Putative uncharacterized protein n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KVW8_9BURK
Cell division protein ZapA {ECO:0000256|SAAS:SAAS00072473}; TaxID=1458275 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis str. Niagara R.;"
cell division protein ZapA; K09888 cell division protein ZapA
SCNpilot_expt_500_bf_scaffold_1579_17
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(13742..14002)
DNA (261bp) protein (87aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0C1H3_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHL21536.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1579_18
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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14368..16260
DNA (1893bp) protein (631aa)
TonB-dependent receptor, plug n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VPU7_POLNA
TonB-dependent receptor, plug; K02014 iron complex outermembrane recepter protein
TonB-dependent receptor, plug {ECO:0000313|EMBL:ABM37675.1}; Flags: Precursor;; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
SCNpilot_expt_500_bf_scaffold_1579_19
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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16284..16862
DNA (579bp) protein (193aa)
adenosylcobinamide-phosphate guanylyltransferase (EC:2.7.7.62); K02231 adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62]
adenosylcobinamide-phosphate guanylyltransferase n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI00037585A2
Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase {ECO:0000313|EMBL:GAD22243.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCNpilot_expt_500_bf_scaffold_1579_20
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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16859..17770
DNA (912bp) protein (304aa)
Candidate ABC transporter probably involved in cobalamin transport, periplasmic component n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y645_RAMTT
cobalamin ABC transporter periplasmic protein; K02016 iron complex transport system substrate-binding protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_500_bf_scaffold_1579_21
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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17883..18935
DNA (1053bp) protein (351aa)
Transport system permease n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MG89_9BURK
Transport system permease {ECO:0000313|EMBL:EIK88229.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
transport system permease; K02015 iron complex transport system permease protein
SCNpilot_expt_500_bf_scaffold_1579_22
unknown

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18932..19090
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1579_23
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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19080..19520
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI00036B56D8
ABC transporter-like protein
Tax=BJP_08E140C01_Burkholderiales_65_30
SCNpilot_expt_500_bf_scaffold_1579_24
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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19520..19825
DNA (306bp) protein (102aa)
ABC transporter-like protein; K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34]
ABC transporter related protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q129U6_POLSJ
ABC transporter related protein {ECO:0000313|EMBL:ABE44696.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
SCNpilot_expt_500_bf_scaffold_1579_25
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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19815..20396
DNA (582bp) protein (194aa)
cob(I)yrinic acid a,c-diamide adenosyltransferase (EC:2.5.1.17); K00798 cob(I)alamin adenosyltransferase [EC:2.5.1.17] rbh
Cob(I)yrinic acid a,c-diamide adenosyltransferase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q129W2_POLSJ rbh
ATP:corrinoid adenosyltransferase {ECO:0000313|EMBL:BAO80284.1}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
SCNpilot_expt_500_bf_scaffold_1579_26

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comp(20502..22043)
DNA (1542bp) protein (514aa)
hypothetical protein n=1 Tax=Actinomadura atramentaria RepID=UPI000380890E rbh
Marine sediment metagenome DNA, contig: S01H1_C00107 {ECO:0000313|EMBL:GAF71939.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
AMP-dependent synthetase and ligase rbh
SCNpilot_expt_500_bf_scaffold_1579_27
Corynebacterium urealyticum, Corynebacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(22056..22541)
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Actinomadura atramentaria RepID=UPI000364C47D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAQ05864.1}; TaxID=504474 species="Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.;" source="Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109).;"
SCNpilot_expt_500_bf_scaffold_1579_28
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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22712..23248
DNA (537bp) protein (179aa)
methylated-DNA/protein-cysteine methyltransferase; K00567 methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
Methylated-DNA/protein-cysteine methyltransferase n=2 Tax=Alicycliphilus denitrificans RepID=E8U028_ALIDB
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_500_bf_scaffold_1579_29
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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23353..23616
DNA (264bp) protein (88aa)
Addiction module antitoxin n=2 Tax=Pseudomonas aeruginosa RepID=V4QUE7_PSEAI
Addiction module antitoxin {ECO:0000313|EMBL:KDP87659.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
CopG/Arc/MetJ family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_1579_30
Candidatus Accumulibacter sp. SK-11, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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23613..23993
DNA (381bp) protein (127aa)
plasmid stabilization protein n=1 Tax=Methyloversatilis universalis RepID=UPI000375ABF2
Plasmid stabilization system protein {ECO:0000313|EMBL:EXI72990.1}; TaxID=1454000 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-11.;"
plasmid stabilization system protein
Displaying items 1-30 of 31 in total

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