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SCNpilot_expt_500_bf_scaffold_1806

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1806_1
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2..736
DNA (735bp) protein (245aa)
Methionyl-tRNA formyltransferase {ECO:0000256|SAAS:SAAS00150580}; EC=2.1.2.9 {ECO:0000256|SAAS:SAAS00150580};; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
methionyl-tRNA formyltransferase; K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9]
Methionyl-tRNA formyltransferase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5TAL1_ACIDE rbh
SCNpilot_expt_500_bf_scaffold_1806_2
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

733..1866
DNA (1134bp) protein (378aa)
AzlC-like protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MT45_9BURK
AzlC family protein
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
SCNpilot_expt_500_bf_scaffold_1806_3
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2272..3468
DNA (1197bp) protein (399aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
Phosphoglycerate kinase n=1 Tax=Acidovorax sp. NO-1 RepID=H0BUV8_9BURK rbh
phosphoglycerate kinase rbh
SCNpilot_expt_500_bf_scaffold_1806_4
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3584..5017
DNA (1434bp) protein (478aa)
pyruvate kinase (EC:2.7.1.40); K00873 pyruvate kinase [EC:2.7.1.40]
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=80866 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (Pseudomonas acidovorans) (Comamonas acidovorans).;"
Pyruvate kinase n=2 Tax=Delftia acidovorans RepID=S2WAW1_DELAC
SCNpilot_expt_500_bf_scaffold_1806_5
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5010..5576)
DNA (567bp) protein (189aa)
Phosphoesterase PA-phosphatase related n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BQG7_DELAS
phosphoesterase PA-phosphatase-like protein
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCNpilot_expt_500_bf_scaffold_1806_6
Delftia sp. Cs1-4, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5573..6292)
DNA (720bp) protein (240aa)
PAP2 (Acid phosphatase) superfamily protein-like protein n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6ALQ9_DELSC
PAP2 (acid phosphatase) superfamily protein-like protein
PAP2 (Acid phosphatase) superfamily protein-like protein {ECO:0000313|EMBL:AEF92564.1}; TaxID=742013 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. (strain Cs1-4).;"
SCNpilot_expt_500_bf_scaffold_1806_7
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6466..7530
DNA (1065bp) protein (355aa)
fructose-bisphosphate aldolase, class II, calvin cycle subtype (EC:4.1.2.13); K01624 fructose-bisphosphate aldolase, class II [EC:4.1.2.13] rbh
Fructose-bisphosphate aldolase, class II, Calvin cycle subtype {ECO:0000313|EMBL:ACM34733.1}; EC=4.1.2.13 {ECO:0000313|EMBL:ACM34733.1};; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
Fructose-bisphosphate aldolase, class II, Calvin cycle subtype n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MHM4_ACIET rbh
SCNpilot_expt_500_bf_scaffold_1806_8
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7623..8519
DNA (897bp) protein (299aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194445}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194458};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=1458275 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis str. Niagara R.;"
phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6); K01923 phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=2 Tax=Alicycliphilus denitrificans RepID=E8TW55_ALIDB
SCNpilot_expt_500_bf_scaffold_1806_9
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8529..9332)
DNA (804bp) protein (268aa)
Alanine racemase domain-containing protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TQT5_TISMK
alanine racemase domain-containing protein
Alanine racemase domain-containing protein {ECO:0000313|EMBL:AFK55123.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_expt_500_bf_scaffold_1806_10
Candidatus Accumulibacter sp. SK-01, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9391..10563)
DNA (1173bp) protein (391aa)
D-3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:KFB68019.1}; EC=1.1.1.95 {ECO:0000313|EMBL:KFB68019.1};; TaxID=1457154 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-01.;"
d-isomer specific 2-hydroxyacid dehydrogenase; K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95] rbh
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RS29_ACCPU rbh
SCNpilot_expt_500_bf_scaffold_1806_11
Candidatus Accumulibacter sp. SK-02, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10610..11728)
DNA (1119bp) protein (373aa)
Phosphoserine transaminase {ECO:0000256|SAAS:SAAS00182444}; EC=2.6.1.52 {ECO:0000256|SAAS:SAAS00182444};; TaxID=1453999 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-02.;"
phosphoserine aminotransferase (EC:2.6.1.52); K00831 phosphoserine aminotransferase [EC:2.6.1.52] rbh
Phosphoserine aminotransferase n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RS28_ACCPU rbh
SCNpilot_expt_500_bf_scaffold_1806_12
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11788..12051
DNA (264bp) protein (88aa)
pyrF; orotidine 5'-phosphate decarboxylase (EC:4.1.1.23)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032256}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032220};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
Orotidine 5'-phosphate decarboxylase n=1 Tax=Acidovorax sp. KKS102 RepID=K0IAF5_9BURK
SCNpilot_expt_500_bf_scaffold_1806_13
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12030..12605
DNA (576bp) protein (192aa)
pyrF; orotidine 5'-phosphate decarboxylase; K01591 orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032256}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032220};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
Orotidine 5'-phosphate decarboxylase n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MI92_ACIET
SCNpilot_expt_500_bf_scaffold_1806_14
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12976..13950
DNA (975bp) protein (325aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I4Z8_9BURK rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV01982.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_500_bf_scaffold_1806_15
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13947..14933
DNA (987bp) protein (329aa)
Succinylglutamate desuccinylase/aspartoacylase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GAY6_ALIDK
succinylglutamate desuccinylase/aspartoacylase
Succinylglutamate desuccinylase/aspartoacylase {ECO:0000313|EMBL:AEB86924.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_500_bf_scaffold_1806_16
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14962..15468)
DNA (507bp) protein (169aa)
hypothetical protein n=1 Tax=Brachymonas chironomi RepID=UPI00035EAD6E
peptidase M48, Ste24p
Tax=CG_Hydro_01
SCNpilot_expt_500_bf_scaffold_1806_17
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15923..16090)
DNA (168bp) protein (56aa)
hypothetical protein n=1 Tax=Comamonas sp. B-9 RepID=UPI000395DAF3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM41840.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_500_bf_scaffold_1806_18
Betaproteobacteria bacterium MOLA814, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16107..16604)
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI0003085A44
Putative inner membrane protein {ECO:0000313|EMBL:ESS14089.1}; TaxID=1408164 species="Bacteria; Proteobacteria; Betaproteobacteria.;" source="Betaproteobacteria bacterium MOLA814.;"
hypothetical protein; K07112
Displaying 18 items

View Taxonomy