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SCNpilot_expt_500_bf_scaffold_1872

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1872_1
Vibrio parahaemolyticus, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..186
DNA (186bp) protein (62aa)
Uncharacterized protein {ECO:0000313|EMBL:BAC60059.1}; TaxID=223926 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633).;"
SCNpilot_expt_500_bf_scaffold_1872_2
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

183..2324
DNA (2142bp) protein (714aa)
hypothetical protein n=1 Tax=Brachymonas chironomi RepID=UPI00036719EB rbh
ABC transporter-like protein; K06158 ATP-binding cassette, subfamily F, member 3
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_expt_500_bf_scaffold_1872_3
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2612..2860
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XZE1_RAMTT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEC21618.1}; TaxID=1007105 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimonas.;" source="Pusillimonas sp. (strain T7-7).;"
SCNpilot_expt_500_bf_scaffold_1872_4
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2960..4168)
DNA (1209bp) protein (403aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI0002E3D8A9 rbh
Membrane protein {ECO:0000313|EMBL:KJA10199.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1872_5
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4433..4591
DNA (159bp) protein (53aa)
hypothetical protein n=1 Tax=Brachymonas chironomi RepID=UPI000362FDE3
Uncharacterized protein {ECO:0000313|EMBL:EIK92869.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1872_6
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4676..5494)
DNA (819bp) protein (273aa)
xanthine dehydrogenase accessory protein XdhC; K07402 xanthine dehydrogenase accessory factor id=5082314 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
xanthine dehydrogenase accessory protein XdhC; K07402 xanthine dehydrogenase accessory factor
Tax=GWE1_Burkholderiales_65_30_curated
SCNpilot_expt_500_bf_scaffold_1872_7
R_Curvibacter_63_18, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5542..5895)
DNA (354bp) protein (118aa)
hydroxyisourate hydrolase; K07127 5-hydroxyisourate hydrolase [EC:3.5.2.17]
5-hydroxyisourate hydrolase id=1268778 bin=GWE1_Burkholderiales_65_30 species=Curvibacter putative symbiont of Hydra magnipapillata genus=Curvibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
Tax=RIFCSPHIGHO2_12_FULL_Curvibacter_63_18_curated
SCNpilot_expt_500_bf_scaffold_1872_8
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5969..6646
DNA (678bp) protein (226aa)
GntR family transcriptional regulator n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MI80_9BURK
GntR family transcriptional regulator {ECO:0000313|EMBL:EIK88920.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
GntR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_1872_9
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6643..7629
DNA (987bp) protein (329aa)
Urate catabolism protein id=1268780 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
polysaccharide deacetylase
Tax=GWE1_Burkholderiales_65_30_curated
SCNpilot_expt_500_bf_scaffold_1872_10
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7635..9425
DNA (1791bp) protein (597aa)
unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein (EC:3.5.1.87); K06016 N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.87]
OHCU decarboxylase n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WR73_DELAC
Allantoate amidohydrolase {ECO:0000313|EMBL:KEH09114.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
SCNpilot_expt_500_bf_scaffold_1872_11
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9476..10687
DNA (1212bp) protein (404aa)
Peptidase dimerization domain protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W522_ACISJ rbh
peptidase dimerisation domain-containing protein rbh
Peptidase dimerization domain protein {ECO:0000313|EMBL:ABM41347.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_500_bf_scaffold_1872_12
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10737..12227
DNA (1491bp) protein (497aa)
permease n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI000314C888
xanthine permease; K03458 nucleobase:cation symporter-2, NCS2 family
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_expt_500_bf_scaffold_1872_13
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12568..12897
DNA (330bp) protein (110aa)
ferredoxin n=1 Tax=Brachymonas chironomi RepID=UPI00036F73EF
4Fe-4S ferredoxin; K05524 ferredoxin
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCNpilot_expt_500_bf_scaffold_1872_14
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12990..14072
DNA (1083bp) protein (361aa)
disulfide oxidoreductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9] rbh
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037D5BE2
Tax=GWA2_Burkholderiales_64_37_curated
SCNpilot_expt_500_bf_scaffold_1872_15
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14177..14935
DNA (759bp) protein (253aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TR47_ACIAC
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABM33435.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
SCNpilot_expt_500_bf_scaffold_1872_16
Leucobacter sp. UCD-THU, Leucobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15065..15400
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Leucobacter salsicius RepID=UPI000380B3A6
Competence protein TfoX {ECO:0000313|EMBL:EYT55212.1}; TaxID=1292023 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leucobacter.;" source="Leucobacter sp. UCD-THU.;"
TfoX domain-containing protein
SCNpilot_expt_500_bf_scaffold_1872_17
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15807..17636
DNA (1830bp) protein (610aa)
gamma-glutamyltransferase n=1 Tax=Acidovorax radicis RepID=UPI000237832A rbh
gamma-glutamyltransferase rbh
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
SCNpilot_expt_500_bf_scaffold_1872_18
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17821..18408
DNA (588bp) protein (196aa)
formate dehydrogenase subunit alpha; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2]
Twin-arginine translocation pathway signal n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MK62_9BURK
Twin-arginine translocation pathway signal {ECO:0000313|EMBL:EIK89602.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
SCNpilot_expt_500_bf_scaffold_1872_19
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18457..18636
DNA (180bp) protein (60aa)
formate dehydrogenase subunit alpha (EC:1.2.1.2); K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2]
Formate dehydrogenase, alpha subunit n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MK61_9BURK
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
Displaying 19 items

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