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SCNpilot_expt_500_bf_scaffold_3083

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3083_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9..995)
DNA (987bp) protein (329aa)
Extracellular solute-binding protein, family 7 n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6M5_VARPE rbh
family 7 extracellular solute-binding protein rbh
Extracellular solute-binding protein, family 7 {ECO:0000313|EMBL:ADU35981.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_bf_scaffold_3083_2
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1187..4897
DNA (3711bp) protein (1237aa)
5-oxoprolinase (EC:3.5.2.9); K01469 5-oxoprolinase (ATP-hydrolysing) [EC:3.5.2.9] rbh
5-oxoprolinase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035D8B9B rbh
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_500_bf_scaffold_3083_3
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5039..5437)
DNA (399bp) protein (133aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BZX8_9BURK
hypothetical protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_expt_500_bf_scaffold_3083_4
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5545..6705)
DNA (1161bp) protein (387aa)
Tetratricopeptide TPR_4 n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WPR1_VEREI
hypothetical protein
Lipopolysaccharide assembly protein B {ECO:0000256|HAMAP-Rule:MF_00994}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_expt_500_bf_scaffold_3083_5
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6695..6994)
DNA (300bp) protein (100aa)
Putative integral membrane protein n=1 Tax=Acidovorax sp. CF316 RepID=J1EMN2_9BURK
Putative integral membrane protein {ECO:0000313|EMBL:EJE53444.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3083_6
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(7512..7976)
DNA (465bp) protein (155aa)
30S ribosomal protein S1 n=1 Tax=Curvibacter lanceolatus RepID=UPI000362E54B
30S ribosomal protein S1 {ECO:0000256|PIRNR:PIRNR002111}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
30S ribosomal protein S1; K02945 small subunit ribosomal protein S1
SCNpilot_expt_500_bf_scaffold_3083_7
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8666..9148)
DNA (483bp) protein (161aa)
30S ribosomal protein S1 n=2 Tax=Delftia acidovorans RepID=S2WCN4_DELAC
rpsA; 30S ribosomal protein S1; K02945 small subunit ribosomal protein S1
Tax=CG_Rhodof_04
SCNpilot_expt_500_bf_scaffold_3083_8
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9373..11379)
DNA (2007bp) protein (669aa)
bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase (EC:2.7.4.14)
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HTX0_9BURK
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_expt_500_bf_scaffold_3083_9
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11394..12266)
DNA (873bp) protein (291aa)
prephenate dehydrogenase; K04517 prephenate dehydrogenase [EC:1.3.1.12] rbh
Prephenate dehydrogenase n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VR18_POLNA rbh
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_expt_500_bf_scaffold_3083_10
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12259..13368)
DNA (1110bp) protein (370aa)
chorismate mutase / prephenate dehydratase (EC:4.2.1.51 5.4.99.5); K14170 chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
Chorismate mutase id=1262642 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
SCNpilot_expt_500_bf_scaffold_3083_11
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13441..13956)
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12CL2_POLSJ
hypothetical protein; K09924 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE43730.1}; Flags: Precursor;; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
SCNpilot_expt_500_bf_scaffold_3083_12
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(14033..16633)
DNA (2601bp) protein (867aa)
DNA gyrase subunit A (EC:5.99.1.3); K02469 DNA gyrase subunit A [EC:5.99.1.3]
DNA gyrase subunit A n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037A851A
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCNpilot_expt_500_bf_scaffold_3083_13
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16885..17547
DNA (663bp) protein (221aa)
OmpA/MotB n=1 Tax=Acidovorax sp. KKS102 RepID=K0HTW4_9BURK rbh
OmpA/MotB protein rbh
OmpA/MotB {ECO:0000313|EMBL:AFU46418.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_500_bf_scaffold_3083_14
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17642..18139
DNA (498bp) protein (166aa)
Uncharacterized protein {ECO:0000313|EMBL:EWS64972.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
id=5080085 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
SCNpilot_expt_500_bf_scaffold_3083_15
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18130..19365
DNA (1236bp) protein (412aa)
id=5080086 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCNpilot_expt_500_bf_scaffold_3083_16
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19412..20128
DNA (717bp) protein (239aa)
3-demethylubiquinone-9 3-methyltransferase (EC:2.1.1.64); K00568 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
Ubiquinone biosynthesis O-methyltransferase n=2 Tax=Variovorax paradoxus RepID=C5CTE8_VARPS
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_expt_500_bf_scaffold_3083_17
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20138..20509
DNA (372bp) protein (124aa)
Phosphoglycolate phosphatase {ECO:0000256|SAAS:SAAS00077902}; EC=3.1.3.18 {ECO:0000256|SAAS:SAAS00077902};; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
phosphoglycolate phosphatase (EC:3.1.3.18); K01091 phosphoglycolate phosphatase [EC:3.1.3.18]
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DKL4_9BACT
SCNpilot_expt_500_bf_scaffold_3083_18
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20556..20759
DNA (204bp) protein (68aa)
Phosphoglycolate phosphatase {ECO:0000256|SAAS:SAAS00077902}; EC=3.1.3.18 {ECO:0000256|SAAS:SAAS00077902};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
phosphoglycolate phosphatase (EC:3.1.3.18); K01091 phosphoglycolate phosphatase [EC:3.1.3.18]
Phosphoglycolate phosphatase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MNR6_9BURK
SCNpilot_expt_500_bf_scaffold_3083_19
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21442..21750)
DNA (309bp) protein (103aa)
ATPase AAA (EC:3.1.21.-); K07452 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-]
AAA ATPase superfamily n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82S33_NITEU
GTPase subunit of restriction endonuclease {ECO:0000313|EMBL:BAO81294.1}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
SCNpilot_expt_500_bf_scaffold_3083_20
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21759..22064)
DNA (306bp) protein (102aa)
Putative uncharacterized protein n=1 Tax=Methyloversatilis universalis FAM5 RepID=F5RBB7_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:EGK72088.1}; TaxID=1000565 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Methyloversatilis universalis (strain ATCC BAA-1314 / JCM 13912 /; FAM5).;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3083_21
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22261..22830
DNA (570bp) protein (190aa)
Type III restriction protein res subunit n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MNT3_9BURK
Type III restriction protein res subunit {ECO:0000313|EMBL:EIK90873.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
type III restriction enzyme, res subunit - like protein
Displaying 21 items

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