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SCNpilot_expt_500_bf_scaffold_3155

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3155_1
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2..730)
DNA (729bp) protein (243aa)
C4-dicarboxylate ABC transporter n=1 Tax=Curvibacter lanceolatus RepID=UPI0003801A1E
TRAP dicarboxylate transporter subunit DctP
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_500_bf_scaffold_3155_2
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(810..2108)
DNA (1299bp) protein (433aa)
TRAP dicarboxylate transporter, DctM subunit n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W3M7_ACISJ
TRAP dicarboxylate transporter subunit DctM
TRAP dicarboxylate transporter, DctM subunit {ECO:0000313|EMBL:ABM40852.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_500_bf_scaffold_3155_3
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2236..2817)
DNA (582bp) protein (194aa)
Tripartite ATP-independent periplasmic transporter DctQ component n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HPI4_RUBGI
dctQ; tripartite ATP-independent periplasmic transporter DctQ component
Tripartite ATP-independent periplasmic transporter DctQ component {ECO:0000313|EMBL:BAL94921.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
SCNpilot_expt_500_bf_scaffold_3155_4
Methylibium sp. T29, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3197..3619
DNA (423bp) protein (141aa)
Regulator of nucleoside diphosphate kinase n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SHG3_METPP
Regulator of nucleoside diphosphate kinase {ECO:0000313|EMBL:EWS55625.1}; TaxID=1430884 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29.;"
regulator of nucleoside diphosphate kinase; K06140 regulator of nucleoside diphosphate kinase
SCNpilot_expt_500_bf_scaffold_3155_5
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3651..4703
DNA (1053bp) protein (351aa)
pyrC; dihydroorotase; K01465 dihydroorotase [EC:3.5.2.3]
dihydroorotase n=1 Tax=Caldimonas manganoxidans RepID=UPI00035C2A8B rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
SCNpilot_expt_500_bf_scaffold_3155_6
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4775..6229)
DNA (1455bp) protein (485aa)
hypothetical protein n=1 Tax=Brachymonas chironomi RepID=UPI0003794D1B rbh
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase {ECO:0000313|EMBL:EJL67933.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative phospholipase D
SCNpilot_expt_500_bf_scaffold_3155_7
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6254..6625)
DNA (372bp) protein (124aa)
ArsC family protein n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6ATZ5_DELSC
ArsC family protein
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_expt_500_bf_scaffold_3155_8
R_Curvibacter_63_18, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6659..7972
DNA (1314bp) protein (438aa)
bifunctional folylpolyglutamate synthase/dihydrofolate synthase; K11754 dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] rbh
FolC bifunctional protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VL78_POLNA rbh
Tax=RIFCSPHIGHO2_12_FULL_Curvibacter_63_18_curated
SCNpilot_expt_500_bf_scaffold_3155_9
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7984..8928
DNA (945bp) protein (315aa)
Sporulation domain-containing protein n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q6G5_ACIAP
sporulation domain-containing protein; K03749 DedD protein
Sporulation domain-containing protein {ECO:0000313|EMBL:ADX45718.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCNpilot_expt_500_bf_scaffold_3155_10
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8940..9434
DNA (495bp) protein (165aa)
colicin V synthesis protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000368BD20
colicin v production protein; K03558 membrane protein required for colicin V production
Uncharacterized protein {ECO:0000313|EMBL:GAD24685.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCNpilot_expt_500_bf_scaffold_3155_11
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9477..10892
DNA (1416bp) protein (472aa)
purF; amidophosphoribosyltransferase; K00764 amidophosphoribosyltransferase [EC:2.4.2.14]
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter
Amidophosphoribosyltransferase n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y0D2_RAMTT
SCNpilot_expt_500_bf_scaffold_3155_12
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10903..12099
DNA (1197bp) protein (399aa)
O-succinylhomoserine sulfhydrylase (EC:2.5.1.48); K10764 O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
O-succinylhomoserine sulfhydrylase n=1 Tax=Polaromonas sp. CF318 RepID=J2U589_9BURK
O-succinylhomoserine sulfhydrylase {ECO:0000313|EMBL:EJL86317.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
SCNpilot_expt_500_bf_scaffold_3155_13
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12172..13560
DNA (1389bp) protein (463aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
Glutamate--tRNA ligase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MN73_9BURK rbh
gltX; glutamyl-tRNA ligase rbh
SCNpilot_expt_500_bf_scaffold_3155_14
unknown

Not on your lists

14009..14674
DNA (666bp) protein (222aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3155_15
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15456..16097)
DNA (642bp) protein (214aa)
hypothetical protein n=1 Tax=Cupriavidus sp. BIS7 RepID=UPI0003808BBB
Uncharacterized protein {ECO:0000313|EMBL:KDP86250.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3155_16
R_Burkholderiales_63_240, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16166..16582)
DNA (417bp) protein (139aa)
putative acyl-coenzyme A synthetase; K00666 fatty-acyl-CoA synthase [EC:6.2.1.-]
Putative long-chain-fatty-acid--CoA ligase n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0Q2L5_9RHIZ
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_63_240_curated
SCNpilot_expt_500_bf_scaffold_3155_17
unknown

Not on your lists

17051..17527
DNA (477bp) protein (159aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3155_18
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17873..18994
DNA (1122bp) protein (374aa)
phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54); K01626 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
Phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Variovorax sp. CF313 RepID=J3CRB3_9BURK
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
Displaying 18 items

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