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SCNpilot_expt_500_bf_scaffold_3327

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3327_1
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(222..1598)
DNA (1377bp) protein (459aa)
Trk system potassium uptake protein TrkG n=1 Tax=Betaproteobacteria bacterium MOLA814 RepID=V4YPD3_9PROT
trkH; Trk system potassium uptake protein TrkH; K03498 trk system potassium uptake protein TrkH
Tax=CG_Rhodof_02
SCNpilot_expt_500_bf_scaffold_3327_2
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1610..2998)
DNA (1389bp) protein (463aa)
trkA; NAD binding component of K+ transport system; K03499 trk system potassium uptake protein TrkA id=5080390 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
trkA; NAD binding component of K+ transport system; K03499 trk system potassium uptake protein TrkA rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
SCNpilot_expt_500_bf_scaffold_3327_3
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3085..3519)
DNA (435bp) protein (145aa)
UPF0225 protein Q5W_1267 n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MR53_9BURK
UPF0225 protein Q5W_1267 {ECO:0000256|HAMAP-Rule:MF_00612}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hypothetical protein; K09858 SEC-C motif domain protein
SCNpilot_expt_500_bf_scaffold_3327_4
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3516..4652)
DNA (1137bp) protein (379aa)
butyryl-CoA dehydrogenase n=1 Tax=Brachymonas chironomi RepID=UPI000361B170
acyl-CoA dehydrogenase domain-containing protein
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCNpilot_expt_500_bf_scaffold_3327_5
Pseudomonas sp. RS-16, Proteobacteria, Bacteria

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comp(4660..5961)
DNA (1302bp) protein (434aa)
Carboxypeptidase G2; Short=CPDG2;; EC=3.4.17.11;; Folate hydrolase G2; Glutamate carboxypeptidase; Pteroylmonoglutamic acid hydrolase G2; AltName: INN=Glucarpidase;; Flags: Precursor;; TaxID=312 species="Bacteria; Proteobacteria.;" source="Pseudomonas sp. (strain RS-16).;"
carboxypeptidase n=1 Tax=Variovorax paradoxus RepID=UPI00037AD3EA
putative carboxypeptidase, M20A family
SCNpilot_expt_500_bf_scaffold_3327_6
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6045..7130)
DNA (1086bp) protein (362aa)
phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54); K01626 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; EC=2.5.1.54 {ECO:0000256|PIRNR:PIRNR001361};; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000256|PIRNR:PIRNR001361}; DAHP synthase {ECO:0000256|PIRNR:PIRNR001361}; Phospho-2-keto-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985
Phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q077_ACIAP
SCNpilot_expt_500_bf_scaffold_3327_7
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7194..7436)
DNA (243bp) protein (81aa)
4Fe-4S ferredoxin n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003788FAB
Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit {ECO:0000313|EMBL:GAD21224.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
4Fe-4S ferredoxin
SCNpilot_expt_500_bf_scaffold_3327_8
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7537..8124)
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Acidovorax radicis RepID=UPI0002377884
NnrU family protein {ECO:0000313|EMBL:EER57780.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
hypothetical protein
Displaying 8 items

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