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SCNpilot_expt_500_bf_scaffold_3607

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3607_1

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275..1507
DNA (1233bp) protein (411aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02007}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
tyrosyl-tRNA synthetase (EC:6.1.1.1); K01866 tyrosyl-tRNA synthetase [EC:6.1.1.1]
Tyrosine--tRNA ligase n=1 Tax=uncultured bacterium RepID=C6KUL7_9BACT rbh
SCNpilot_expt_500_bf_scaffold_3607_2

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1584..2531
DNA (948bp) protein (316aa)
Cation efflux protein n=1 Tax=uncultured bacterium RepID=C6KUM6_9BACT rbh
Cation efflux protein {ECO:0000313|EMBL:BAH89674.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
cation diffusion facilitator family transporter
SCNpilot_expt_500_bf_scaffold_3607_3
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2536..2979
DNA (444bp) protein (148aa)
D-tyrosyl-tRNA(Tyr) deacylase; K07560 D-tyrosyl-tRNA(Tyr) deacylase [EC:3.1.-.-]
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518};; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
D-tyrosyl-tRNA(Tyr) deacylase n=1 Tax=Variovorax paradoxus RepID=UPI0003811B13
SCNpilot_expt_500_bf_scaffold_3607_4
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3016..4416
DNA (1401bp) protein (467aa)
hypothetical protein; K05591 ATP-independent RNA helicase DbpA [EC:3.6.4.13] rbh
Hypothetical conserved protein n=1 Tax=Comamonas testosteroni (strain CNB-2) RepID=D0J8E1_COMT2 rbh
DEAD/DEAH box helicase {ECO:0000313|EMBL:KGH26635.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
SCNpilot_expt_500_bf_scaffold_3607_5

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comp(4529..4996)
DNA (468bp) protein (156aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Endoribonuclease YbeY n=1 Tax=uncultured bacterium RepID=C6L101_9BACT
hypothetical protein; K07042 probable rRNA maturation factor
SCNpilot_expt_500_bf_scaffold_3607_6

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comp(5055..6014)
DNA (960bp) protein (320aa)
Phosphate starvation-inducible protein PhoH n=1 Tax=uncultured bacterium RepID=C6L102_9BACT rbh
Phosphate starvation-inducible protein PhoH {ECO:0000313|EMBL:BAH90421.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
phoh family protein; K06217 phosphate starvation-inducible protein PhoH and related proteins
SCNpilot_expt_500_bf_scaffold_3607_7
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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6040..8337
DNA (2298bp) protein (766aa)
Putative sensor histidine kinase n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TT49_TISMK
yxjM; putative sensor histidine kinase
Putative sensor histidine kinase {ECO:0000313|EMBL:AFK55937.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_expt_500_bf_scaffold_3607_8
R_Burkholderiales_63_240, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8457..9071
DNA (615bp) protein (205aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y8E0_LEPCP
two component LuxR family transcriptional regulator
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_63_240_curated
SCNpilot_expt_500_bf_scaffold_3607_9
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9265..9843
DNA (579bp) protein (193aa)
ruvA; Holliday junction DNA helicase RuvA; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12]
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000255|HAMAP-Rule:MF_00031}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_00031};; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=RUVA_RHOFD
SCNpilot_expt_500_bf_scaffold_3607_10

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9853..10914
DNA (1062bp) protein (354aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ruvB; holliday junction DNA helicase ruvb; K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12] rbh
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=uncultured bacterium RepID=C6L104_9BACT rbh
Displaying 10 items

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