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SCNpilot_expt_500_bf_scaffold_2555

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2555_1
Cardiobacterium hominis, Cardiobacterium, Cardiobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..451
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N9F1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EEV88742.1}; TaxID=638300 species="Bacteria; Proteobacteria; Gammaproteobacteria; Cardiobacteriales; Cardiobacteriaceae; Cardiobacterium.;" source="Cardiobacterium hominis ATCC 15826.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2555_2
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

480..710
DNA (231bp) protein (77aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI000300BF54
Uncharacterized protein {ECO:0000313|EMBL:EQB16171.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
SCNpilot_expt_500_bf_scaffold_2555_3
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

713..937
DNA (225bp) protein (75aa)
Acetyltransferase n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KPA5_9BURK
Acetyltransferase {ECO:0000313|EMBL:EGI78346.1}; TaxID=887062 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis ATCC 19624.;"
staT; putative streptothricin acetyltransferase
SCNpilot_expt_500_bf_scaffold_2555_4
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1014..1844)
DNA (831bp) protein (277aa)
Transposase IS4 family protein n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6ZB14_9RHOO
Transposase IS4 family protein {ECO:0000313|EMBL:ENO89359.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
transposase IS4 family protein
SCNpilot_expt_500_bf_scaffold_2555_5
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2093..2521)
DNA (429bp) protein (143aa)
Heat shock protein Hsp15 n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W6F6_ACISJ
RNA-binding S4 domain-containing protein; K04762 ribosome-associated heat shock protein Hsp15
Heat shock protein Hsp15 {ECO:0000313|EMBL:ABM41831.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_500_bf_scaffold_2555_6
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2581..4320
DNA (1740bp) protein (580aa)
HAD superfamily P-type ATPase (EC:3.6.3.8); K01537 Ca2+-transporting ATPase [EC:3.6.3.8]
ATPase n=1 Tax=Methyloversatilis universalis RepID=UPI00037893C8
Cation transport ATPase {ECO:0000313|EMBL:KDB51455.1}; TaxID=1286631 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;" source="Sphaerotilus natans subsp. natans DSM 6575.;"
SCNpilot_expt_500_bf_scaffold_2555_7
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4326..4838
DNA (513bp) protein (171aa)
ATPase, P-type (Transporting), HAD superfamily, subfamily IC n=1 Tax=Methanolinea tarda NOBI-1 RepID=G6FKD2_9EURY
Uncharacterized protein {ECO:0000313|EMBL:KFL37819.1}; TaxID=1121014 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghaensis DSM 18148 = HO3-R19.;"
ATPase, E1-E2 type
SCNpilot_expt_500_bf_scaffold_2555_8
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4882..6411
DNA (1530bp) protein (510aa)
Fis family transcriptional regulator n=1 Tax=Acidovorax radicis RepID=UPI00023762C4
pas modulated Fis family transcriptional regulator
Pas modulated Fis family transcriptional regulator {ECO:0000313|EMBL:AFU46977.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_500_bf_scaffold_2555_9
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6544..7728
DNA (1185bp) protein (395aa)
Extracellular ligand-binding receptor n=1 Tax=Acidovorax sp. NO-1 RepID=H0BZP4_9BURK
Extracellular ligand-binding receptor {ECO:0000313|EMBL:EHL22183.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
extracellular ligand-binding receptor
SCNpilot_expt_500_bf_scaffold_2555_10
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7822..8580
DNA (759bp) protein (253aa)
ABC transporter related protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5TAF6_ACIDE
ABC transporter related protein {ECO:0000313|EMBL:EER58545.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
ABC transporter-like protein; K01995 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_500_bf_scaffold_2555_11
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8723..9448
DNA (726bp) protein (242aa)
ABC transporter related n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CJJ3_VARPS
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_expt_500_bf_scaffold_2555_12
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9618..10601
DNA (984bp) protein (328aa)
Branched-chain amino acid transport system permease n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WBW9_DELAC rbh
Branched-chain amino acid transport system permease {ECO:0000313|EMBL:EPD35690.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein rbh
SCNpilot_expt_500_bf_scaffold_2555_13
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10842..11915
DNA (1074bp) protein (358aa)
ABC transporter permease n=1 Tax=Chryseobacterium taeanense RepID=UPI0002EFEA13 rbh
ABC transporter permease; K01998 branched-chain amino acid transport system permease protein rbh
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
SCNpilot_expt_500_bf_scaffold_2555_14
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11950..14031
DNA (2082bp) protein (694aa)
D-(-)-3-hydroxybutyrate oligomer hydrolase {ECO:0000256|HAMAP-Rule:MF_01906}; Short=3HB-oligomer hydrolase {ECO:0000256|HAMAP-Rule:MF_01906};; Short=3HBOH {ECO:0000256|HAMAP-Rule:MF_01906};; EC=3.1.1.22 {ECO:0000256|HAMAP-Rule:MF_01906};; Flags: Precursor;; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
cytochrome C1 n=1 Tax=Acidovorax radicis RepID=UPI0002376622
D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane
SCNpilot_expt_500_bf_scaffold_2555_15
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14034..14456
DNA (423bp) protein (141aa)
hydrolase n=1 Tax=Chryseobacterium taeanense RepID=UPI00036B86AC
alpha/beta hydrolase fold protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
SCNpilot_expt_500_bf_scaffold_2555_16
R_Curvibacter_63_18, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14453..14848
DNA (396bp) protein (132aa)
hydrolase n=1 Tax=Acidovorax radicis RepID=UPI0002376624
D-(-)-3-hydroxybutyrate oligomer hydrolase
Tax=RIFCSPHIGHO2_12_FULL_Curvibacter_63_18_curated
SCNpilot_expt_500_bf_scaffold_2555_17
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14907..15890)
DNA (984bp) protein (328aa)
Uncharacterized protein n=1 Tax=Thauera terpenica 58Eu RepID=T0B0U1_9RHOO
TRAP-type C4-dicarboxylate transport system, periplasmic component {ECO:0000313|EMBL:CDM22973.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
TRAP dicarboxylate transporter subunit DctP rbh
SCNpilot_expt_500_bf_scaffold_2555_18
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15927..17204)
DNA (1278bp) protein (426aa)
Uncharacterized protein n=1 Tax=Thauera terpenica 58Eu RepID=T0AUA6_9RHOO rbh
TRAP-type C4-dicarboxylate transport system, large permease component {ECO:0000313|EMBL:CDM22972.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
TRAP dicarboxylate transporter, large permease component (DctM-like)
SCNpilot_expt_500_bf_scaffold_2555_19
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17201..17581)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Thauera terpenica 58Eu RepID=S9ZGB3_9RHOO
TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter {ECO:0000313|EMBL:CDM22971.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
ABC transporter
SCNpilot_expt_500_bf_scaffold_2555_20
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17941..19011)
DNA (1071bp) protein (357aa)
Ferrochelatase {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607}; EC=4.99.1.1 {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607};; Heme synthase {ECO:0000256|HAMAP-Rule:MF_00323}; Protoheme ferro-lyase {ECO:0000256|HAMAP-Rule:MF_00323}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
ferrochelatase n=1 Tax=Curvibacter lanceolatus RepID=UPI00035DC08A
ferrochelatase
SCNpilot_expt_500_bf_scaffold_2555_21
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19050..19763
DNA (714bp) protein (238aa)
Predicted hydrolase {ECO:0000313|EMBL:GAD21330.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
HAD family hydrolase id=1266412 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
HAD-superfamily hydrolase; K07025 putative hydrolase of the HAD superfamily
SCNpilot_expt_500_bf_scaffold_2555_22
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20068..21225
DNA (1158bp) protein (386aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA008 RepID=U9N2V6_PSEAI rbh
Uncharacterised protein {ECO:0000313|EMBL:CKI14323.1}; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_2555_23
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21828..22691
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa E2 RepID=K1DDB8_PSEAI rbh
Integrase {ECO:0000313|EMBL:CEI15168.1}; Phage integrase protein {ECO:0000313|EMBL:ACD39298.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_2555_24
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22707..25103)
DNA (2397bp) protein (799aa)
type III restriction enzyme (EC:3.1.21.5); K01156 type III restriction enzyme [EC:3.1.21.5] rbh
Type III restriction enzyme n=1 Tax=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) RepID=Q7WNX2_BORBR rbh
Type III restriction enzyme, res subunit {ECO:0000313|EMBL:KDD50989.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
Displaying 24 items

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