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SCNpilot_expt_500_bf_scaffold_2838

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2838_1
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3..908
DNA (906bp) protein (302aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T742_ACIDE
SCNpilot_expt_500_bf_scaffold_2838_2
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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853..2853
DNA (2001bp) protein (667aa)
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6) id=12551355 bin=BDI species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
DNA-directed RNA polymerase subunit beta'; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_500_bf_scaffold_2838_3
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2930..3508
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y0T8_RAMTT
hypothetical protein; K03744 LemA protein
Uncharacterized protein {ECO:0000313|EMBL:AEG94682.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_expt_500_bf_scaffold_2838_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3508..4836
DNA (1329bp) protein (443aa)
sun protein; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00274011};; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
16S rRNA methyltransferase n=1 Tax=Variovorax paradoxus RepID=UPI0003799FD4
SCNpilot_expt_500_bf_scaffold_2838_5
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4781..5425
DNA (645bp) protein (215aa)
Putative proline rich signal peptide protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21SG0_RHOFD
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
SCNpilot_expt_500_bf_scaffold_2838_6
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5422..7740
DNA (2319bp) protein (773aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
Candidate histidine kinase, classic n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y0T5_RAMTT
histidine kinase
SCNpilot_expt_500_bf_scaffold_2838_7
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7770..8480
DNA (711bp) protein (237aa)
Candidate response regulator, Fis n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y0T4_RAMTT rbh
response regulator Fis rbh
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_expt_500_bf_scaffold_2838_8
Methylophaga lonarensis, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10447..10734)
DNA (288bp) protein (96aa)
Excinuclease ABC, C subunit-like protein n=1 Tax=Methylophaga lonarensis MPL RepID=M7NV89_9GAMM
Excinuclease ABC, C subunit-like protein {ECO:0000313|EMBL:EMR12678.1}; TaxID=1286106 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylophaga lonarensis MPL.;"
Excinuclease ABC, C subunit-like protein
SCNpilot_expt_500_bf_scaffold_2838_9
Roseobacter sp. AzwK-3b, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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11256..12278
DNA (1023bp) protein (341aa)
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:EDM70103.1}; EC=6.1.1.12 {ECO:0000313|EMBL:EDM70103.1};; TaxID=351016 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobacter sp. AzwK-3b.;"
hypothetical protein; K08679 UDP-glucuronate 4-epimerase [EC:5.1.3.6] rbh
Aspartyl-tRNA synthetase n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FUT8_9RHOB rbh
SCNpilot_expt_500_bf_scaffold_2838_10
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13039..13374)
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALJ24 RepID=UPI00037041C7
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
SCNpilot_expt_500_bf_scaffold_2838_11
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13641..13856
DNA (216bp) protein (72aa)
UDP-glucose/GDP-mannose dehydrogenase; K02474 UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.-]
Vi polysaccharide biosynthesis protein vipA/tviB n=1 Tax=Brachymonas chironomi RepID=UPI0003645A97
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_expt_500_bf_scaffold_2838_12
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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14137..15189
DNA (1053bp) protein (351aa)
oxidoreductase domain-containing protein; K13016 UDP-D-GlcNAcA oxidase [EC:1.1.1.-] rbh
Oxidoreductase domain protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WA74_ACISJ rbh
Oxidoreductase domain protein {ECO:0000313|EMBL:ABM43149.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_500_bf_scaffold_2838_13
Pseudomonas sp. BAY1663, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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15208..15792
DNA (585bp) protein (195aa)
Acetyltransferase n=1 Tax=Pseudomonas mendocina DLHK RepID=J7TLZ2_PSEME rbh
acetyltransferase rbh
UDP-2-acetamido-3-amino-2,3-dideoxy-d-glucuronic acid N-acetyltransferase, WbpD {ECO:0000313|EMBL:EXF44006.1}; TaxID=1439940 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. BAY1663.;"
SCNpilot_expt_500_bf_scaffold_2838_14
Nitrosomonas eutropha, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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15839..16093
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=Q0AGC4_NITEC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABI59608.1}; TaxID=335283 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas eutropha (strain C91).;"
SCNpilot_expt_500_bf_scaffold_2838_15
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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16096..16524
DNA (429bp) protein (143aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
Ribonuclease VapC n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WA87_ACISJ
PilT domain-containing protein
SCNpilot_expt_500_bf_scaffold_2838_16
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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16580..16837
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q124X8_POLSJ
Plasmid stability protein {ECO:0000313|EMBL:BAO79986.1}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2838_17
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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16834..17268
DNA (435bp) protein (145aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
PilT protein-like protein; K07062
PilT protein-like protein id=2232384 bin=GWB2_Pelobacter_53_15 species=Acetobacter pasteurianus genus=Acetobacter taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWB2_Pelobacter_53_15 organism_group=Deltaproteobacteria organism_desc=Good
SCNpilot_expt_500_bf_scaffold_2838_18
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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17274..17387
DNA (114bp) protein (38aa)
DegT/DnrJ/EryC1/StrS aminotransferase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HWC9_9BURK
DegT/DnrJ/EryC1/StrS aminotransferase
DegT/DnrJ/EryC1/StrS aminotransferase {ECO:0000313|EMBL:AFU45182.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
Displaying 18 items

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