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SCNpilot_expt_500_bf_scaffold_750

Search features with annotation key words

Displaying items 1-30 of 73 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_750_1
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..699
DNA (699bp) protein (233aa)
GntR family transcriptional regulator n=1 Tax=Sphingobium ummariense RL-3 RepID=T0KCR6_9SPHN
GntR family transcriptional regulator {ECO:0000313|EMBL:EQB31278.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
GntR domain-containing protein
SCNpilot_expt_500_bf_scaffold_750_2
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

827..2344
DNA (1518bp) protein (506aa)
2,5-dioxovalerate dehydrogenase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002DF4B7D rbh
2,5-dioxovalerate dehydrogenase {ECO:0000313|EMBL:AJP73120.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
aldehyde dehydrogenase
SCNpilot_expt_500_bf_scaffold_750_3
Methylobacterium sp. ME121, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2477..3517)
DNA (1041bp) protein (347aa)
aldose 1-epimerase (EC:5.1.3.3); K01785 aldose 1-epimerase [EC:5.1.3.3]
Aldose 1-epimerase {ECO:0000256|PIRNR:PIRNR005096}; EC=5.1.3.3 {ECO:0000256|PIRNR:PIRNR005096};; Galactose mutarotase {ECO:0000256|PIRNR:PIRNR005096}; TaxID=1604132 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. ME121.;"
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002DD3FDC rbh
SCNpilot_expt_500_bf_scaffold_750_4
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3523..5109)
DNA (1587bp) protein (529aa)
1,4-beta-D-glucan glucohydrolase D; K01188 beta-glucosidase [EC:3.2.1.21]
1,4-beta-D-glucan glucohydrolase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F9C47D rbh
1,4-beta-D-glucan glucohydrolase {ECO:0000313|EMBL:AJP73119.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_750_5
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5966..7486)
DNA (1521bp) protein (507aa)
ABC transporter permease n=1 Tax=Sphingomonas elodea RepID=UPI0002630865 rbh
ABC transporter permease {ECO:0000313|EMBL:AJP73118.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
substrate-binding region of ABC-type glycine betaine transport system; K05845 osmoprotectant transport system substrate-binding protein; K05846 osmoprotectant transport system permease protein rbh
SCNpilot_expt_500_bf_scaffold_750_6
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7483..8250)
DNA (768bp) protein (256aa)
ABC transporter ATP-binding protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003829441 rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:AJP73117.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
ABC transporter ATP-binding protein; K05847 osmoprotectant transport system ATP-binding protein rbh
SCNpilot_expt_500_bf_scaffold_750_7
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8306..9085
DNA (780bp) protein (260aa)
short-chain dehydrogenase n=1 Tax=Sphingomonas elodea RepID=UPI00026301FF
Sphingomonas taxi strain 30a NODE_43, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26326.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
short chain dehydrogenase
SCNpilot_expt_500_bf_scaffold_750_8
Hyphomonas jannaschiana, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9136..9624
DNA (489bp) protein (163aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ88508.1}; TaxID=1280952 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas jannaschiana VP2.;"
SCNpilot_expt_500_bf_scaffold_750_9
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9661..9948)
DNA (288bp) protein (96aa)
Putative pterin-4-alpha-carbinolamine dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; Short=PHS {ECO:0000256|HAMAP-Rule:MF_00434};; EC=4.2.1.96 {ECO:0000256|HAMAP-Rule:MF_00434};; 4-alpha-hydroxy-tetrahydropterin dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; Pterin carbinolamine dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
phhB; pterin-4-alpha-carbinolamine dehydratase (EC:4.2.1.96); K01724 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
pterin-4-alpha-carbinolamine dehydratase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000311562D
SCNpilot_expt_500_bf_scaffold_750_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9997..10389
DNA (393bp) protein (131aa)
Neutral zinc metallopeptidase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00036B8154
Neutral zinc metallopeptidase {ECO:0000313|EMBL:AJP73114.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_750_11
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10437..10952
DNA (516bp) protein (172aa)
Cytochrome c biogenesis ATP-binding export protein CcmA {ECO:0000256|HAMAP-Rule:MF_01707}; EC=3.6.3.41 {ECO:0000256|HAMAP-Rule:MF_01707};; Heme exporter protein A {ECO:0000256|HAMAP-Rule:MF_01707}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
cytochrome C biogenesis protein CcmA n=1 Tax=Sphingomonas elodea RepID=UPI0002630408
heme exporter protein CcmA
SCNpilot_expt_500_bf_scaffold_750_12
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10949..11587
DNA (639bp) protein (213aa)
cytochrome C biogenesis protein CcmB n=1 Tax=Sphingomonas elodea RepID=UPI0002630409 rbh
Heme exporter protein B {ECO:0000256|PIRNR:PIRNR002764}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
cytochrome c-type biogenesis protein CcmB; K02194 heme exporter protein B
SCNpilot_expt_500_bf_scaffold_750_13
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11592..12146
DNA (555bp) protein (185aa)
UPI0003CDD2C1 related cluster n=1 Tax=unknown RepID=UPI0003CDD2C1
Uncharacterized protein {ECO:0000313|EMBL:ESW89009.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
SCNpilot_expt_500_bf_scaffold_750_14
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12149..12445)
DNA (297bp) protein (99aa)
Uncharacterized protein {ECO:0000313|EMBL:AJP73111.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_750_15
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12445..13098)
DNA (654bp) protein (218aa)
hypothetical protein; K06969 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
SAM-dependent methyltransferase n=1 Tax=Sphingomonas elodea RepID=UPI0002630B3C
SAM-dependent methyltransferase {ECO:0000313|EMBL:AJP73110.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_750_16
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13132..13314)
DNA (183bp) protein (61aa)
putative SAM-dependent methyltransferase; K06969 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
SAM-dependent methyltransferase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003023A9F
SAM-dependent methyltransferase {ECO:0000313|EMBL:AHE57071.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
SCNpilot_expt_500_bf_scaffold_750_17
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13464..14855)
DNA (1392bp) protein (464aa)
Threonine synthase {ECO:0000313|EMBL:AJP73109.1}; EC=4.2.3.1 {ECO:0000313|EMBL:AJP73109.1};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
thrC; threonine synthase; K01733 threonine synthase [EC:4.2.3.1]
threonine synthase n=1 Tax=Sphingomonas elodea RepID=UPI0002630B3B rbh
SCNpilot_expt_500_bf_scaffold_750_18
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14946..15566)
DNA (621bp) protein (207aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E63360
Uncharacterized protein {ECO:0000313|EMBL:AJP73107.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_750_19
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15566..16006)
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000304D259
Uncharacterized protein {ECO:0000313|EMBL:AJP73106.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_750_20
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15969..16772)
DNA (804bp) protein (268aa)
cytochrome c oxidase subunit III; K02276 cytochrome c oxidase subunit III [EC:1.9.3.1]
cytochrome B562 n=1 Tax=Sphingomonas elodea RepID=UPI0002631063 rbh
Cytochrome B562 {ECO:0000313|EMBL:AJP73105.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_750_21
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16909..17409)
DNA (501bp) protein (167aa)
cytochrome C oxidase assembly protein n=1 Tax=Sphingomonas elodea RepID=UPI0002631062
Cytochrome c oxidase assembly protein CtaG {ECO:0000256|HAMAP-Rule:MF_00155}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
cytochrome C oxidase assembly protein
SCNpilot_expt_500_bf_scaffold_750_22
unknown

Not on your lists

comp(17406..17585)
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_750_23
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17582..18484)
DNA (903bp) protein (301aa)
Protoheme IX farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154, ECO:0000313|EMBL:AJP74596.1}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_00154};; Heme B farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; Heme O synthase {ECO:0000256|HAMAP-Rule:MF_00154}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
protoheme IX farnesyltransferase (EC:2.5.1.-) rbh
protoheme IX farnesyltransferase n=1 Tax=Sphingomonas elodea RepID=UPI0002631061 rbh
SCNpilot_expt_500_bf_scaffold_750_24
Enterobacteria phage EcoDS1, T7likevirus, Caudovirales, Viruses

Not on your lists

comp(18591..20075)
DNA (1485bp) protein (495aa)
Gp17 {ECO:0000313|EMBL:ACF15825.1}; TaxID=532075 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Podoviridae; Autographivirinae; T7likevirus.;" source="Enterobacteria phage EcoDS1.;"
SCNpilot_expt_500_bf_scaffold_750_25
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20255..20647)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63) RepID=I3ZMB3_TERRK
Uncharacterized protein {ECO:0000313|EMBL:AHE55828.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_750_26
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20682..21095)
DNA (414bp) protein (138aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000288A28F
Uncharacterized protein {ECO:0000313|EMBL:AHE55828.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
SCNpilot_expt_500_bf_scaffold_750_27
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21287..22888)
DNA (1602bp) protein (534aa)
cytochrome C oxidase subunit I n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D2CDAC rbh
Cytochrome C oxidase subunit I {ECO:0000313|EMBL:AJP73103.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
cytochrome c oxidase subunit I rbh
SCNpilot_expt_500_bf_scaffold_750_28
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22893..23984)
DNA (1092bp) protein (364aa)
Cytochrome c oxidase subunit 2 {ECO:0000256|RuleBase:RU004024}; EC=1.9.3.1 {ECO:0000256|RuleBase:RU004024};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
cytochrome C oxidase subunit II n=1 Tax=Sphingomonas elodea RepID=UPI000263105D rbh
cytochrome c oxidase subunit II rbh
SCNpilot_expt_500_bf_scaffold_750_29
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24262..24741
DNA (480bp) protein (160aa)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00078102}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216337};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
orotate phosphoribosyltransferase; K00762 orotate phosphoribosyltransferase [EC:2.4.2.10]
orotate phosphoribosyltransferase n=1 Tax=Sphingomonas elodea RepID=UPI000263105C
SCNpilot_expt_500_bf_scaffold_750_30
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24755..25483
DNA (729bp) protein (243aa)
Pyridoxine 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088558}; Short=PNP synthase {ECO:0000256|HAMAP-Rule:MF_00279};; EC=2.6.99.2 {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088588};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
pyridoxine 5''''-phosphate synthase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D3C698 rbh
pyridoxine 5'-phosphate synthase
Displaying items 1-30 of 73 in total

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