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SCNpilot_expt_500_bf_scaffold_841

Search features with annotation key words

Displaying items 1-30 of 65 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_841_1
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..1155
DNA (1155bp) protein (385aa)
deoxyguanosinetriphosphate triphosphohydrolase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003112D39 rbh
Deoxyguanosinetriphosphate triphosphohydrolase-like protein {ECO:0000256|HAMAP-Rule:MF_01212}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
putative deoxyguanosinetriphosphate triphosphohydrolase rbh
SCNpilot_expt_500_bf_scaffold_841_2
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1205..1480)
DNA (276bp) protein (92aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CCE78
Uncharacterized protein {ECO:0000313|EMBL:AJP72047.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_841_3
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1707..3221
DNA (1515bp) protein (505aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002630133 rbh
Uncharacterized protein {ECO:0000313|EMBL:AJP72046.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_841_4
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3227..4384
DNA (1158bp) protein (386aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002FD503B rbh
Uncharacterized protein {ECO:0000313|EMBL:AJP72045.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_841_5
unknown

Not on your lists

4450..5562
DNA (1113bp) protein (371aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_841_6
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5701..6423
DNA (723bp) protein (241aa)
Lysophospholipase n=1 Tax=Sphingobium sp. HDIP04 RepID=T0GHL3_9SPHN
putative lysophospholipase
Lysophospholipase L1-like esterase {ECO:0000313|EMBL:KEZ19290.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
SCNpilot_expt_500_bf_scaffold_841_7
Rhizobium lupini, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6565..7668
DNA (1104bp) protein (368aa)
mdoC; glucans biosynthesis protein; K11941 glucans biosynthesis protein C [EC:2.1.-.-]
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037D5E8C
Glucans biosynthesis protein C {ECO:0000313|EMBL:EKJ95968.1}; TaxID=1229491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium lupini HPC(L).;"
SCNpilot_expt_500_bf_scaffold_841_8
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8127..8852
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8ACL0_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:EMS95612.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_841_9
unknown

Not on your lists

9035..9307
DNA (273bp) protein (91aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_841_10
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9312..9965)
DNA (654bp) protein (218aa)
Transcriptional regulator n=1 Tax=Sphingobium sp. AP49 RepID=J2DDV8_9SPHN
Transcriptional regulator {ECO:0000313|EMBL:EJK80962.1}; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
TetR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_841_11
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(10111..11667)
DNA (1557bp) protein (519aa)
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
SCNpilot_expt_500_bf_scaffold_841_12
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12081..12557
DNA (477bp) protein (159aa)
sporulation domain-containing protein n=1 Tax=Sphingomonas elodea RepID=UPI00026301A5
Sporulation protein {ECO:0000313|EMBL:AJP72043.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_841_13
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12670..13677
DNA (1008bp) protein (336aa)
Beta-N-acetylhexosaminidase {ECO:0000256|SAAS:SAAS00114579}; EC=3.2.1.52 {ECO:0000256|SAAS:SAAS00114579};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
beta-N-acetylhexosaminidase; K01207 beta-N-acetylhexosaminidase [EC:3.2.1.52]
beta-hexosaminidase n=1 Tax=Sphingomonas elodea RepID=UPI00026301A6 rbh
SCNpilot_expt_500_bf_scaffold_841_14
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13736..14470
DNA (735bp) protein (245aa)
chromosome segregation and condensation protein ScpA n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00031A4909 rbh
Chromosome segregation protein ScpA {ECO:0000313|EMBL:AJP72039.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
chromosome segregation and condensation protein ScpA; K05896 segregation and condensation protein A rbh
SCNpilot_expt_500_bf_scaffold_841_15
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14467..15072
DNA (606bp) protein (202aa)
segregation and condensation protein B n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002DDE87A rbh
Segregation and condensation protein B {ECO:0000256|SAAS:SAAS00086417}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
chromosome segregation and condensation protein ScpB; K06024 segregation and condensation protein B
SCNpilot_expt_500_bf_scaffold_841_16
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15145..15378
DNA (234bp) protein (78aa)
preprotein translocase subunit TatA n=1 Tax=Sphingomonas elodea RepID=UPI0002631728
Sec-independent protein translocase protein TatA {ECO:0000256|HAMAP-Rule:MF_00236}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
tatA; twin arginine translocase protein A
SCNpilot_expt_500_bf_scaffold_841_17
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15435..15989
DNA (555bp) protein (185aa)
twin-arginine translocation protein subunit TatB n=1 Tax=Sphingomonas elodea RepID=UPI0002631729
Sphingomonas taxi strain 30a NODE_27, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26950.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
twin-arginine translocation protein TatB subunit; K03117 sec-independent protein translocase protein TatB
SCNpilot_expt_500_bf_scaffold_841_18
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15986..16774
DNA (789bp) protein (263aa)
preprotein translocase subunit TatC n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000317E5EE rbh
Sec-independent protein translocase protein TatC {ECO:0000256|HAMAP-Rule:MF_00902}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
Sec-independent protein translocase TatC; K03118 sec-independent protein translocase protein TatC
SCNpilot_expt_500_bf_scaffold_841_19
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16830..16964)
DNA (135bp) protein (45aa)
Entericidin EcnA/B family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WYM5_9SPHN
Entericidin EcnAB {ECO:0000313|EMBL:AJP72035.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_841_20
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17276..18850)
DNA (1575bp) protein (525aa)
histidine kinase n=1 Tax=Sphingomonas elodea RepID=UPI0002631AB8 rbh
Histidine kinase {ECO:0000313|EMBL:AJP72034.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
putative signal transduction histidine kinase
SCNpilot_expt_500_bf_scaffold_841_21
unknown

Not on your lists

comp(18861..19028)
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_841_22
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19312..20109
DNA (798bp) protein (266aa)
chemotaxis protein CheY n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F6FE6C rbh
Phyllosphere-induced regulator PhyR {ECO:0000313|EMBL:AJP72033.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
CheY-like response regulator
SCNpilot_expt_500_bf_scaffold_841_23
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20181..20318
DNA (138bp) protein (46aa)
Uncharacterized protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VF36_SPHWW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ70902.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_500_bf_scaffold_841_24
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20414..21073
DNA (660bp) protein (220aa)
RNA polymerase sigma 70 n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00036868BF rbh
RNA polymerase sigma 70 {ECO:0000313|EMBL:AJP72032.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
ECF subfamily RNA polymerase sigma-24 factor rbh
SCNpilot_expt_500_bf_scaffold_841_25
unknown

Not on your lists

comp(21148..21321)
DNA (174bp) protein (58aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_841_26
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21396..24083
DNA (2688bp) protein (896aa)
Glutamate-ammonia-ligase adenylyltransferase {ECO:0000256|SAAS:SAAS00086160, ECO:0000313|EMBL:AJP72031.1}; EC=2.7.7.42 {ECO:0000256|SAAS:SAAS00086164};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
glutamate-ammonia ligase adenylyltransferase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D3CAE1 rbh
glutamate-ammonia-ligase adenylyltransferase rbh
SCNpilot_expt_500_bf_scaffold_841_27
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24094..24567
DNA (474bp) protein (158aa)
alkyl hydroperoxide reductase n=1 Tax=Sphingomonas elodea RepID=UPI0002630DC4
Alkyl hydroperoxide reductase {ECO:0000313|EMBL:AJP72030.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
alkyl hydroperoxide reductase
SCNpilot_expt_500_bf_scaffold_841_28
unknown

Not on your lists

24567..24902
DNA (336bp) protein (112aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_841_29
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24904..25704
DNA (801bp) protein (267aa)
rhamnosyltransferase n=1 Tax=Sphingomonas elodea RepID=UPI0002630DC5 rbh
Rhamnosyltransferase {ECO:0000313|EMBL:AJP74417.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_841_30
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25828..27018
DNA (1191bp) protein (397aa)
peptidase M23 n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030CCFA6 rbh
Peptidase M23 {ECO:0000313|EMBL:AJP72029.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
peptidase M23B rbh
Displaying items 1-30 of 65 in total

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