ggKbase home page

SCNpilot_expt_500_bf_scaffold_887

Search features with annotation key words

Displaying items 1-30 of 66 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_887_1
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..237)
DNA (237bp) protein (79aa)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00151}; Pantetheine-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
coaD; phosphopantetheine adenylyltransferase (EC:2.7.7.3)
phosphopantetheine adenylyltransferase n=1 Tax=Sphingomonas RepID=UPI000288CF9D
SCNpilot_expt_500_bf_scaffold_887_2
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(275..1126)
DNA (852bp) protein (284aa)
farnesyl-diphosphate synthase n=1 Tax=Sphingomonas elodea RepID=UPI000263054E rbh
Farnesyl-diphosphate synthase {ECO:0000313|EMBL:AJP74572.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
polyprenyl synthetase
SCNpilot_expt_500_bf_scaffold_887_3
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1135..1380)
DNA (246bp) protein (82aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
exodeoxyribonuclease VII small subunit (EC:3.1.11.6); K03602 exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
exodeoxyribonuclease VII small subunit n=1 Tax=Sphingomonas RepID=UPI000263054D
SCNpilot_expt_500_bf_scaffold_887_4
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1474..2859
DNA (1386bp) protein (462aa)
GabD2; K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16] rbh
succinate-semialdehyde dehdyrogenase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002EAD2D9 rbh
Succinate-semialdehyde dehydrogenase {ECO:0000313|EMBL:AJP72976.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_887_5
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2864..3232)
DNA (369bp) protein (123aa)
Blue (Type 1) copper domain-containing protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8SDT2_9SPHN
Blue (Type 1) copper domain-containing protein {ECO:0000313|EMBL:EJU11039.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_887_6
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3229..4734)
DNA (1506bp) protein (502aa)
long-chain-fatty-acid--CoA ligase (EC:6.2.1.3)
AMP-dependent synthetase n=1 Tax=Sphingomonas elodea RepID=UPI000263054A rbh
AMP-dependent synthetase {ECO:0000313|EMBL:AJP72974.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_887_7
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4923..5087)
DNA (165bp) protein (55aa)
Uncharacterized protein {ECO:0000313|EMBL:AJP72973.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_887_8
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5171..5812)
DNA (642bp) protein (214aa)
signal peptide protein n=1 Tax=Sphingomonas elodea RepID=UPI0002630548
Signal peptide protein {ECO:0000313|EMBL:AJP74571.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
diguanylate cyclase
SCNpilot_expt_500_bf_scaffold_887_9
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5812..6795)
DNA (984bp) protein (328aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00036B3893
Signal peptide protein {ECO:0000313|EMBL:AJP74571.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_887_10
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6926..8125)
DNA (1200bp) protein (400aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9D3X0_SPHYA rbh
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
SCNpilot_expt_500_bf_scaffold_887_11
unknown

Not on your lists

8201..8296
DNA (96bp) protein (32aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_887_12
unknown

Not on your lists

8403..8828
DNA (426bp) protein (142aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_887_13
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8785..10968)
DNA (2184bp) protein (728aa)
ATP-dependent Clp protease ATP-binding protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00031985BA
Clp protease ClpX {ECO:0000313|EMBL:AJP72972.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
ATP-dependent Clp protease ATP-binding subunit ClpA
SCNpilot_expt_500_bf_scaffold_887_14
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11403..12383
DNA (981bp) protein (327aa)
NAD(P)H quinone oxidoreductase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E831A8 rbh
NAD(P)H-quinone oxidoreductase {ECO:0000313|EMBL:AJP74570.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
NAD(P)H quinone oxidoreductase PIG3 family protein
SCNpilot_expt_500_bf_scaffold_887_15
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12478..13101
DNA (624bp) protein (208aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000301D721
Uncharacterized protein {ECO:0000313|EMBL:EQB31318.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_887_16
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12971..13699)
DNA (729bp) protein (243aa)
Uncharacterized protein {ECO:0000313|EMBL:BAR60613.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
SCNpilot_expt_500_bf_scaffold_887_17
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13849..14802
DNA (954bp) protein (318aa)
membrane protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D3FCC8
Membrane protein {ECO:0000313|EMBL:AJR24151.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_887_18
unknown

Not on your lists

14832..15422
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002488EDC
SCNpilot_expt_500_bf_scaffold_887_19
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15513..16133
DNA (621bp) protein (207aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00036481AE rbh
Uncharacterized protein {ECO:0000313|EMBL:AJP72970.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
glutathione S-transferase
SCNpilot_expt_500_bf_scaffold_887_20
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16277..17119
DNA (843bp) protein (281aa)
phosphoesterase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002FF058C rbh
Phosphoesterase {ECO:0000313|EMBL:AJP72969.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_887_21
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17140..18162
DNA (1023bp) protein (341aa)
putative glycosyltransferase (EC:2.4.1.-) rbh
GDP-mannose-dependent alpha-mannosyltransferase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003606312 rbh
GDP-mannose-dependent alpha-mannosyltransferase {ECO:0000313|EMBL:AJP74569.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_887_22
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18356..19036
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002631E5B rbh
Uncharacterized protein {ECO:0000313|EMBL:AHE55847.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein; K09987 hypothetical protein
SCNpilot_expt_500_bf_scaffold_887_23
Hyphomonas jannaschiana, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19195..20007)
DNA (813bp) protein (271aa)
N-acetyltransferase; K00622 arylamine N-acetyltransferase [EC:2.3.1.5]
N-acetyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9S6_NOVAD
N-acetyltransferase {ECO:0000313|EMBL:KCZ83870.1}; TaxID=1280952 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas jannaschiana VP2.;"
SCNpilot_expt_500_bf_scaffold_887_24
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20045..21172)
DNA (1128bp) protein (376aa)
Short-chain-acyl-CoA dehydrogenase {ECO:0000313|EMBL:GAM97618.1}; EC=1.3.8.1 {ECO:0000313|EMBL:GAM97618.1};; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
acyl-CoA dehydrogenase n=1 Tax=Leptolyngbya boryana RepID=UPI000365DEB2 rbh
acyl-CoA dehydrogenase rbh
SCNpilot_expt_500_bf_scaffold_887_25
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21334..22026
DNA (693bp) protein (231aa)
Putative transcriptional regulator n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QI85_9BRAD rbh
Transcriptional regulator of HxlR family {ECO:0000313|EMBL:GAM97619.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
putative transcriptional regulator
SCNpilot_expt_500_bf_scaffold_887_26
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22310..22897
DNA (588bp) protein (196aa)
hydrolase; K01061 carboxymethylenebutenolidase [EC:3.1.1.45]
dienelactone hydrolase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000374523F
Dienelactone hydrolase {ECO:0000313|EMBL:AJP72967.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_887_27
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22960..23598
DNA (639bp) protein (213aa)
glutathione S-transferase domain-containing protein; K00799 glutathione S-transferase [EC:2.5.1.18]
glutathione S-transferase n=1 Tax=Sphingomonas elodea RepID=UPI0002631E59
Glutathione S-transferase {ECO:0000313|EMBL:AJP72966.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_887_28
BJP_IG2158_Zixibacteria_48_33, Zixibacteria, Bacteria

Not on your lists

comp(23675..24619)
DNA (945bp) protein (315aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00036C0BF2 rbh
metal-dependent hydrolase; K07045
Tax=BJP_IG2158_Zixibacteria_48_33
SCNpilot_expt_500_bf_scaffold_887_29
Hyphomonadaceae bacterium BRH_c29, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24790..24987)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3J7V1_9RHIZ
Fe-S oxidoreductase {ECO:0000313|EMBL:KJS25542.1}; TaxID=1629720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae.;" source="Hyphomonadaceae bacterium BRH_c29.;"
hypothetical protein; K06938
SCNpilot_expt_500_bf_scaffold_887_30
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24984..25499)
DNA (516bp) protein (172aa)
thiol-disulfide isomerase n=1 Tax=Sphingomonas elodea RepID=UPI00026308EB
Thiol-disulfide isomerase {ECO:0000313|EMBL:AIT06666.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
thiol-disulfide isomerase
Displaying items 1-30 of 66 in total

View Taxonomy