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SCNpilot_expt_500_bf_scaffold_904

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_904_1
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..868)
DNA (867bp) protein (289aa)
poly(3-hydroxyalkanoate) depolymerase (EC:3.1.1.-); K03932 polyhydroxybutyrate depolymerase rbh
polyhydroxybutyrate depolymerase n=1 Tax=Sphingomonas elodea RepID=UPI00026316CD rbh
Polyhydroxybutyrate depolymerase {ECO:0000313|EMBL:AJP74684.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_904_2
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

947..2551
DNA (1605bp) protein (535aa)
L-aspartate oxidase {ECO:0000256|RuleBase:RU362049, ECO:0000313|EMBL:AJP74685.1}; EC=1.4.3.16 {ECO:0000256|RuleBase:RU362049, ECO:0000313|EMBL:AJP74685.1};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
nadB; L-aspartate oxidase (EC:1.4.3.16); K00278 L-aspartate oxidase [EC:1.4.3.16] rbh
L-aspartate oxidase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F77198 rbh
SCNpilot_expt_500_bf_scaffold_904_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2623..3981
DNA (1359bp) protein (453aa)
Alg9-like mannosyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G604_NOVAD rbh
Alg9 family protein mannosyltransferase {ECO:0000313|EMBL:GAO56558.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Alg9-like mannosyltransferase rbh
SCNpilot_expt_500_bf_scaffold_904_4
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4145..5266
DNA (1122bp) protein (374aa)
Beta-lactamase {ECO:0000256|SAAS:SAAS00063099, ECO:0000313|EMBL:AJP74686.1}; EC=3.5.2.6 {ECO:0000256|SAAS:SAAS00063099};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
putative beta-lactamase class A (EC:3.5.2.6); K01467 beta-lactamase [EC:3.5.2.6]
beta-lactamase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00031F247C rbh
SCNpilot_expt_500_bf_scaffold_904_5
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5450..8206
DNA (2757bp) protein (919aa)
DNA polymerase I; K02335 DNA polymerase I [EC:2.7.7.7] rbh
DNA polymerase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003032D50 rbh
DNA polymerase {ECO:0000313|EMBL:AJP73637.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_904_6
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8215..9516
DNA (1302bp) protein (434aa)
polysaccharide biosynthesis protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E23F6F rbh
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:AJP73638.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
putative polysaccharide transporter
SCNpilot_expt_500_bf_scaffold_904_7
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9686..11257)
DNA (1572bp) protein (524aa)
purH; phosphoribosylaminoimidazolecarboxamide formyltransferase (EC:2.1.2.3 3.5.4.10); K00602 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] rbh
IMP cyclohydrolase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F53EFE rbh
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_904_8
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11360..11566)
DNA (207bp) protein (69aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IJY7_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCA91805.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_expt_500_bf_scaffold_904_9
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11602..13335)
DNA (1734bp) protein (578aa)
heparinase n=1 Tax=Sphingomonas elodea RepID=UPI0002630757 rbh
Heparinase {ECO:0000313|EMBL:AJP73641.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_904_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13332..13988)
DNA (657bp) protein (219aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461, ECO:0000313|EMBL:AJP74687.1}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
rpe; ribulose-phosphate 3-epimerase; K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1]
ribulose-phosphate 3-epimerase n=1 Tax=Sphingomonas elodea RepID=UPI0002630756 rbh
SCNpilot_expt_500_bf_scaffold_904_11
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14026..14532)
DNA (507bp) protein (169aa)
Fmu (Sun) domain-containing protein; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
SAM-dependent methlyltransferase n=1 Tax=Sphingomonas elodea RepID=UPI0002630DB7
SAM-dependent methlyltransferase {ECO:0000313|EMBL:AJP73642.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_904_12
unknown

Not on your lists

14690..15355
DNA (666bp) protein (222aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_904_13
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15331..15489
DNA (159bp) protein (53aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000382AE0D
Uncharacterized protein {ECO:0000313|EMBL:GAO40281.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
SCNpilot_expt_500_bf_scaffold_904_14
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15486..16022)
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD664
Uncharacterized protein {ECO:0000313|EMBL:GAM99693.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_904_15
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16019..16999)
DNA (981bp) protein (327aa)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00394}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (EC:1.1.1.94) rbh
glycerol-3-phosphate dehydrogenase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E21CCE rbh
SCNpilot_expt_500_bf_scaffold_904_16
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16996..18159)
DNA (1164bp) protein (388aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00018957}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphapr
protein kinase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248BBAA
UGMP family protein rbh
SCNpilot_expt_500_bf_scaffold_904_17
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18226..19140
DNA (915bp) protein (305aa)
Porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260, ECO:0000313|EMBL:AJP73645.1}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000256|HAMAP-Rule:MF_00260}; Pre-uroporphyrinogen synthase {ECO:0000256|HAMAP-Rule:MF_00260}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hemC; porphobilinogen deaminase (EC:2.5.1.61) rbh
porphobilinogen deaminase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00035EDA1B rbh
SCNpilot_expt_500_bf_scaffold_904_18
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19137..19805
DNA (669bp) protein (223aa)
uroporphyrinogen-III synthase n=1 Tax=Sphingomonas elodea RepID=UPI00026319DB
Uroporphyrinogen-III synthase {ECO:0000313|EMBL:AJP73646.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
uroporphyrinogen III synthase HEM4
SCNpilot_expt_500_bf_scaffold_904_19
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19837..20670
DNA (834bp) protein (278aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003077858
Uncharacterized protein {ECO:0000313|EMBL:AJP73647.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_904_20
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20791..21975
DNA (1185bp) protein (395aa)
glutaryl-CoA dehydrogenase; K00252 glutaryl-CoA dehydrogenase [EC:1.3.99.7] rbh
acyl-CoA dehydrogenase n=1 Tax=Sphingomonas elodea RepID=UPI00026319DD rbh
Glutaryl-CoA dehydrogenase {ECO:0000313|EMBL:BAF89556.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_expt_500_bf_scaffold_904_21
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21975..22493
DNA (519bp) protein (173aa)
acetyltransferase n=1 Tax=Sphingomonas elodea RepID=UPI00026319DE
Acetyltransferase {ECO:0000313|EMBL:AJP73648.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
acetyltransferase
SCNpilot_expt_500_bf_scaffold_904_22
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22490..23596
DNA (1107bp) protein (369aa)
L-carnitine dehydratase n=1 Tax=Sphingomonas elodea RepID=UPI00026319DF rbh
CoA-transferase {ECO:0000313|EMBL:AJP73649.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
L-carnitine dehydratase/bile acid-inducible protein F
SCNpilot_expt_500_bf_scaffold_904_23
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23672..26584)
DNA (2913bp) protein (971aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003637CE5 rbh
TonB-dependent Receptor Plug domain protein {ECO:0000313|EMBL:EZP56168.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein rbh
SCNpilot_expt_500_bf_scaffold_904_24
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26868..27665)
DNA (798bp) protein (266aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003010D0F rbh
Uncharacterized protein {ECO:0000313|EMBL:AJP74689.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_904_25
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27726..28151)
DNA (426bp) protein (142aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00037D447B
Uncharacterized protein {ECO:0000313|EMBL:AJP74690.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_904_26
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28536..29438
DNA (903bp) protein (301aa)
thioredoxin n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00037D8F9A rbh
Thioredoxin {ECO:0000313|EMBL:AJP73650.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
thioredoxin domain-containing protein rbh
SCNpilot_expt_500_bf_scaffold_904_27
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29435..30055
DNA (621bp) protein (207aa)
ATP-dependent protease n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030D2DB9 rbh
ATP-dependent protease {ECO:0000313|EMBL:AJP73651.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
peptidase S16, lon-like; K07157
SCNpilot_expt_500_bf_scaffold_904_28
Komagataeibacter medellinensis, Komagataeibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30052..30447
DNA (396bp) protein (132aa)
Putative uncharacterized protein n=1 Tax=Gluconacetobacter xylinus (strain NBRC 3288 / BCRC 11682 / LMG 1693) RepID=G2I0G2_GLUXN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK84420.1}; TaxID=634177 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.;" source="Komagataeibacter medellinensis (strain NBRC 3288 / BCRC 11682 / LMG; 1693 / Kondo 51) (Gluconacetobacter medellinensis).;"
SCNpilot_expt_500_bf_scaffold_904_29
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30452..31618)
DNA (1167bp) protein (389aa)
ubiquinone biosynthesis protein UbiH n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00031CD28D rbh
Ubiquinone biosynthesis protein UbiH {ECO:0000313|EMBL:AJP73652.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
Displaying 29 items

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