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SCNpilot_expt_500_bf_scaffold_916

Search features with annotation key words

Displaying items 1-30 of 67 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_916_1
unknown

Not on your lists

comp(2..139)
DNA (138bp) protein (46aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_916_2
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(329..2710)
DNA (2382bp) protein (794aa)
Putative TonB-dependent receptor n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YNN1_9SPHN rbh
Putative TonB-dependent receptor {ECO:0000313|EMBL:GAD50455.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
TonB-dependent receptor-like protein rbh
SCNpilot_expt_500_bf_scaffold_916_3
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2697..3617)
DNA (921bp) protein (307aa)
hypothetical protein n=1 Tax=Sphingomonas wittichii RepID=UPI00036D6F09
Uncharacterized protein {ECO:0000313|EMBL:AJP74267.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
anti-FecI sigma factor FecR
SCNpilot_expt_500_bf_scaffold_916_4
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3651..4070)
DNA (420bp) protein (140aa)
ECF subfamily RNA polymerase sigma-24 factor n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z3U9_9SPHN
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:AJP71264.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
ECF subfamily RNA polymerase sigma-24 factor
SCNpilot_expt_500_bf_scaffold_916_5
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4150..5706)
DNA (1557bp) protein (519aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002E07462 rbh
Uncharacterized protein {ECO:0000313|EMBL:KHS48313.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_916_6
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5830..6231)
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI00024885E6
Uncharacterized protein {ECO:0000313|EMBL:AHE57194.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_916_7
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6348..6962)
DNA (615bp) protein (205aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI0003817B95
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB65760.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_500_bf_scaffold_916_8
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6962..8581)
DNA (1620bp) protein (540aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI000362100E
hypothetical protein
Sulphate transporter {ECO:0000313|EMBL:ABS69391.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_expt_500_bf_scaffold_916_9
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8750..9283)
DNA (534bp) protein (178aa)
Response regulator receiver protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GT07_SPHAL
Response regulator receiver protein {ECO:0000313|EMBL:KGB59077.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
response regulator receiver protein; K15012 two-component system, response regulator RegA
SCNpilot_expt_500_bf_scaffold_916_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9280..10572)
DNA (1293bp) protein (431aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121, ECO:0000313|EMBL:AJP74151.1}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S1B3_9SPHN rbh
integral membrane sensor signal transduction histidine kinase rbh
SCNpilot_expt_500_bf_scaffold_916_11
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10569..11279)
DNA (711bp) protein (237aa)
Surfeit locus 1 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WHP2_9SPHN
Surfeit locus 1 {ECO:0000313|EMBL:ENY82991.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
Surfeit locus 1; K14998 surfeit locus 1 family protein
SCNpilot_expt_500_bf_scaffold_916_12
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11276..11677)
DNA (402bp) protein (134aa)
Cytochrome o ubiquinol oxidase subunit IV n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YHP5_9SPHN
Cytochrome o ubiquinol oxidase subunit IV {ECO:0000313|EMBL:GAD47447.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
cytochrome C oxidase subunit IV; K02300 cytochrome o ubiquinol oxidase operon protein cyoD
SCNpilot_expt_500_bf_scaffold_916_13
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11674..12303)
DNA (630bp) protein (210aa)
cytochrome c oxidase subunit III; K02299 cytochrome o ubiquinol oxidase subunit III [EC:1.10.3.-]
Cytochrome o ubiquinol oxidase subunit III n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WE69_9SPHN rbh
Cytochrome o ubiquinol oxidase subunit III {ECO:0000313|EMBL:EIZ78503.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
SCNpilot_expt_500_bf_scaffold_916_14
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12307..14256)
DNA (1950bp) protein (650aa)
cytochrome-c oxidase; K02298 cytochrome o ubiquinol oxidase subunit I [EC:1.10.3.-]
Cytochrome o ubiquinol oxidase subunit I n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YH92_9SPHN
Cytochrome O ubiquinol oxidase {ECO:0000313|EMBL:AHE57261.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
SCNpilot_expt_500_bf_scaffold_916_15
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14271..15368)
DNA (1098bp) protein (366aa)
ubiquinol oxidase subunit II; K02297 cytochrome o ubiquinol oxidase subunit II [EC:1.10.3.-]
Cytochrome o ubiquinol oxidase subunit II n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZQ02_9SPHN
Cytochrome O ubiquinol oxidase {ECO:0000313|EMBL:AJP74152.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_916_16
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15574..16899
DNA (1326bp) protein (442aa)
General substrate transporter n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WHN7_9SPHN
General substrate transporter {ECO:0000313|EMBL:KGB56696.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
general substrate transporter
SCNpilot_expt_500_bf_scaffold_916_17
unknown

Not on your lists

comp(16940..17101)
DNA (162bp) protein (54aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_916_18
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17168..17668)
DNA (501bp) protein (167aa)
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCNpilot_expt_500_bf_scaffold_916_19
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17668..18009)
DNA (342bp) protein (114aa)
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCNpilot_expt_500_bf_scaffold_916_20
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18289..18999
DNA (711bp) protein (237aa)
GntR family transcriptional regulator n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00037A791F
GntR family transcriptional regulator {ECO:0000313|EMBL:AJA07329.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
GntR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_916_21
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19867..21402
DNA (1536bp) protein (512aa)
TonB-denpendent receptor n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CA6C8 rbh
TonB-dependent receptor, putative
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
SCNpilot_expt_500_bf_scaffold_916_22
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21470..23074
DNA (1605bp) protein (535aa)
AMP-dependent synthetase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CCEA1 rbh
AMP-dependent synthetase and ligase rbh
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ABZ71987.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_expt_500_bf_scaffold_916_23
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23363..24991)
DNA (1629bp) protein (543aa)
Carboxylic ester hydrolase; EC=3.1.1.-;; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
carboxylesterase type B; K03929 para-nitrobenzyl esterase [EC:3.1.1.-] rbh
carboxylesterase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CCEA2 rbh
SCNpilot_expt_500_bf_scaffold_916_24
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24988..26265)
DNA (1278bp) protein (426aa)
MFS transporter n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CA6C5 rbh
major facilitator transporter rbh
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCNpilot_expt_500_bf_scaffold_916_25
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26401..27087
DNA (687bp) protein (229aa)
Transcriptional regulator, TetR family n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RFK5_PHEZH rbh
transcriptional regulator, TetR family rbh
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ACG77086.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_expt_500_bf_scaffold_916_26
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27171..28064
DNA (894bp) protein (298aa)
Short-chain alcohol dehydrogenase-like protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RFK9_PHEZH rbh
short-chain alcohol dehydrogenase-like protein rbh
Short-chain alcohol dehydrogenase-like protein {ECO:0000313|EMBL:ACG77090.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_expt_500_bf_scaffold_916_27
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28061..29335
DNA (1275bp) protein (425aa)
glycoside hydrolase family protein; K05350 beta-glucosidase [EC:3.2.1.21]
Glycoside hydrolase family protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UYI2_9SPHN
Glycoside hydrolase family protein {ECO:0000313|EMBL:ENY83289.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_916_28
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29504..31297)
DNA (1794bp) protein (598aa)
ABC transporter related n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VFW6_SPHWW rbh
ABC transporter related {ECO:0000313|EMBL:ABQ71182.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
ABC transporter-like protein; K06147 ATP-binding cassette, subfamily B, bacterial rbh
SCNpilot_expt_500_bf_scaffold_916_29
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31580..31879
DNA (300bp) protein (100aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CAB6E
Uncharacterized protein {ECO:0000313|EMBL:KER82223.1}; TaxID=454957 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas arboricola pv. celebensis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_916_30

Not on your lists

31897..33042
DNA (1146bp) protein (382aa)
Major Facilitator Superfamily n=1 Tax=uncultured organism RepID=T1W6W4_9ZZZZ rbh
Major Facilitator Superfamily {ECO:0000313|EMBL:AGU10473.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
major facilitator superfamily protein rbh
Displaying items 1-30 of 67 in total

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