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SCNpilot_expt_500_bf_scaffold_1419

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1419_1
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3..2858
DNA (2856bp) protein (952aa)
TonB-denpendent receptor n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F96370
TonB-dependent receptor {ECO:0000313|EMBL:ACF51477.1}; Flags: Precursor;; TaxID=391008 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain R551-3).;"
TonB-dependent receptor
SCNpilot_expt_500_bf_scaffold_1419_2
Janthinobacterium sp. HH01, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2943..4604
DNA (1662bp) protein (554aa)
tryptophan halogenase; K14266 FADH2 O2-dependent halogenase I [EC:1.14.14.7]
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000349FBE4 rbh
Tryptophan halogenase {ECO:0000313|EMBL:ELX10416.1}; TaxID=1198452 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. HH01.;"
SCNpilot_expt_500_bf_scaffold_1419_3
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4618..6060
DNA (1443bp) protein (481aa)
twin-arginine translocation pathway signal protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC0E0 rbh
Uncharacterized protein {ECO:0000313|EMBL:EZP57222.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
twin-arginine translocation pathway signal protein; K09704 hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_1419_4
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6824..7489
DNA (666bp) protein (222aa)
Major Facilitator Superfamily protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WWL7_9SPHN
DNA, contig: SP636 {ECO:0000313|EMBL:GAN14387.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
amino acid/peptide transporter; K03305 proton-dependent oligopeptide transporter, POT family
SCNpilot_expt_500_bf_scaffold_1419_5
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7473..8279)
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WB90_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EIZ77426.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1419_6
unknown

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comp(8455..8757)
DNA (303bp) protein (101aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1419_7

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comp(8853..10460)
DNA (1608bp) protein (536aa)
phlN1; phospholipase C precursor (EC:3.1.4.3); K01114 phospholipase C [EC:3.1.4.3]
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI0003819320 rbh
Phosphoesterase family {ECO:0000313|EMBL:AGU10241.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
SCNpilot_expt_500_bf_scaffold_1419_8
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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10580..11335
DNA (756bp) protein (252aa)
DeoR-like helix-turn-helix domain protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WWL6_9SPHN rbh
Putative transcriptional regulator {ECO:0000313|EMBL:GAM00457.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
DeoR family transcriptional regulator; K02444 DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
SCNpilot_expt_500_bf_scaffold_1419_9

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comp(11345..12568)
DNA (1224bp) protein (408aa)
glucose-1-phosphatase (EC:3.1.3.10); K01093 4-phytase / acid phosphatase [EC:3.1.3.26 3.1.3.2] rbh
Histidine phosphatase superfamily (Branch 2) n=1 Tax=uncultured organism RepID=T1W5G8_9ZZZZ rbh
Histidine phosphatase superfamily (Branch 2) {ECO:0000313|EMBL:AGU10237.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
SCNpilot_expt_500_bf_scaffold_1419_10
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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12758..15601
DNA (2844bp) protein (948aa)
TonB-dependent receptor family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WWL5_9SPHN rbh
DNA, contig: SP636 {ECO:0000313|EMBL:GAN14389.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
TonB-dependent receptor rbh
SCNpilot_expt_500_bf_scaffold_1419_11
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15698..17020)
DNA (1323bp) protein (441aa)
Coproporphyrinogen-III oxidase {ECO:0000256|PIRNR:PIRNR000167}; EC=1.3.99.22 {ECO:0000256|PIRNR:PIRNR000167};; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
hemN; oxygen-independent coproporphyrinogen III oxidase (EC:1.3.99.22); K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22] rbh
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00036BBE9E rbh
SCNpilot_expt_500_bf_scaffold_1419_12
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17067..18659)
DNA (1593bp) protein (531aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9DC48_SPHYA rbh
Fused ATPase/permease component of ABC-type transporter {ECO:0000313|EMBL:KEZ14495.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
ABC transporter-like protein
SCNpilot_expt_500_bf_scaffold_1419_13
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(18656..20179)
DNA (1524bp) protein (508aa)
ATPase and permease component of ABC-type transporter involved in cytochrome bd biosynthesis n=1 Tax=Sphingobium sp. AP49 RepID=J2WPI6_9SPHN rbh
ATPase and permease component of ABC-type transporter involved in cytochrome bd biosynthesis {ECO:0000313|EMBL:EJK84145.1}; Flags: Precursor;; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
cysteine ABC transporter permease/ATP-binding protein; K16013 ATP-binding cassette, subfamily C, bacterial CydD
SCNpilot_expt_500_bf_scaffold_1419_14
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20318..21871
DNA (1554bp) protein (518aa)
cytochrome bd ubiquinol oxidase subunit I; K00425 cytochrome d ubiquinol oxidase subunit I [EC:1.10.3.-]
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9DG37_SPHYA rbh
Uncharacterized protein {ECO:0000313|EMBL:EKU76425.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
SCNpilot_expt_500_bf_scaffold_1419_15
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21899..23044
DNA (1146bp) protein (382aa)
cytochrome BD oxidase subunit II n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037981B6 rbh
Cytochrome d ubiquinol oxidase, subunit II {ECO:0000313|EMBL:EKU76424.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
cytochrome d ubiquinol oxidase subunit II
SCNpilot_expt_500_bf_scaffold_1419_16
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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23057..23179
DNA (123bp) protein (41aa)
Cyd operon protein YbgT n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VCR3_SPHWW
cyd operon protein YbgT
Cyd operon protein YbgT {ECO:0000313|EMBL:ABQ70079.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_500_bf_scaffold_1419_17
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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23285..24115
DNA (831bp) protein (277aa)
Putative hydrolase or acyltransferase of alpha/beta superfamily n=1 Tax=Rhizobium sp. CF142 RepID=J1SHT3_9RHIZ rbh
Putative hydrolase or acyltransferase of alpha/beta superfamily {ECO:0000313|EMBL:EJJ24808.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
alpha/beta hydrolase rbh
SCNpilot_expt_500_bf_scaffold_1419_18
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24152..26356)
DNA (2205bp) protein (735aa)
aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; K11177 xanthine dehydrogenase YagR molybdenum-binding subunit [EC:1.17.1.4] rbh
xanthine dehydrogenase n=1 Tax=Sphingomonas elodea RepID=UPI0002631A56 rbh
Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein {ECO:0000313|EMBL:KGB56843.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
SCNpilot_expt_500_bf_scaffold_1419_19
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(26360..27310)
DNA (951bp) protein (317aa)
Putative xanthine dehydrogenase, FAD binding subunit {ECO:0000313|EMBL:CCV12858.1}; EC=1.17.1.4 {ECO:0000313|EMBL:CCV12858.1};; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
oxidoreductase, molybdopterin-binding subunit; K11178 xanthine dehydrogenase YagS FAD-binding subunit [EC:1.17.1.4]
Putative xanthine dehydrogenase, FAD binding subunit n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F9N2_9RHIZ rbh
SCNpilot_expt_500_bf_scaffold_1419_20
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27307..27954)
DNA (648bp) protein (216aa)
(2Fe-2S)-binding domain protein n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VJM3_CAUST rbh
(2Fe-2S)-binding domain-containing protein; K13483 xanthine dehydrogenase YagT iron-sulfur-binding subunit rbh
(2Fe-2S)-binding domain protein {ECO:0000313|EMBL:ADG10552.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_expt_500_bf_scaffold_1419_21
RIFOXYB1_FULL_Caulobacterales_67_16_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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28849..30657
DNA (1809bp) protein (603aa)
beta-D-glucosidase; K05349 beta-glucosidase [EC:3.2.1.21] rbh
Glycosyl hydrolase family 3 N terminal domain protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WBL6_9CAUL rbh
Tax=RIFOXYB1_FULL_Caulobacterales_67_16_curated
SCNpilot_expt_500_bf_scaffold_1419_22

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30726..33902
DNA (3177bp) protein (1059aa)
TonB dependent receptor (Fragment) n=1 Tax=uncultured organism RepID=T1W4X0_9ZZZZ rbh
TonB dependent receptor {ECO:0000313|EMBL:AGU09972.1}; Flags: Fragment;; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
TonB-dependent receptor rbh
SCNpilot_expt_500_bf_scaffold_1419_23

Not on your lists

34033..36372
DNA (2340bp) protein (780aa)
Tryptophan halogenase n=1 Tax=uncultured organism RepID=T1WBH1_9ZZZZ rbh
Tryptophan halogenase {ECO:0000313|EMBL:AGU11874.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
tryptophan halogenase rbh
Displaying 23 items

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