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SCNpilot_expt_500_bf_scaffold_1903

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Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1903_1
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..377
DNA (375bp) protein (125aa)
aminoglycoside phosphotransferase n=1 Tax=Sphingomonas elodea RepID=UPI0002630AC4
Aminoglycoside phosphotransferase {ECO:0000313|EMBL:AJP71900.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
aminoglycoside phosphotransferase; K06979
SCNpilot_expt_500_bf_scaffold_1903_2
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

446..778
DNA (333bp) protein (111aa)
short-chain dehydrogenase/reductase SDR (EC:1.1.1.-)
short-chain dehydrogenase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000381E72D
Short-chain dehydrogenase {ECO:0000313|EMBL:KHA65652.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
SCNpilot_expt_500_bf_scaffold_1903_3
Ricinus communis, Ricinus, Malpighiales, rosids, Streptophyta, Viridiplantae

Not on your lists

799..1164
DNA (366bp) protein (122aa)
short-chain dehydrogenase n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI00028A0422
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:EEF22849.1}; Flags: Fragment;; TaxID=3988 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus.;" source="Ricinus communis (Castor bean).;"
SCNpilot_expt_500_bf_scaffold_1903_4
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1197..1982
DNA (786bp) protein (262aa)
oxidoreductase n=1 Tax=Sphingomonas elodea RepID=UPI0002630AC3 rbh
Oxidoreductase {ECO:0000313|EMBL:AJP71899.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
short-chain dehydrogenase/reductase SDR rbh
SCNpilot_expt_500_bf_scaffold_1903_5
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2037..2756
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2H158_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:AJP74388.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
TonB-dependent receptor
SCNpilot_expt_500_bf_scaffold_1903_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2753..3652)
DNA (900bp) protein (300aa)
Phenazine biosynthesis protein PhzF family n=1 Tax=Microvirga sp. WSM3557 RepID=I4YRH7_9RHIZ rbh
Phenazine biosynthesis PhzC/PhzF protein {ECO:0000313|EMBL:KFC68917.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
phenazine antibiotic biosynthesis related protein; K06998
SCNpilot_expt_500_bf_scaffold_1903_7
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3678..4097)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L484_FRAAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFC86560.1}; Flags: Precursor;; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB; 13370) (Acetobacter aurantius).;"
SCNpilot_expt_500_bf_scaffold_1903_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4211..4945
DNA (735bp) protein (245aa)
Pentapeptide repeat n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13F55_RHOPS rbh
pentapeptide repeat-containing protein rbh
Pentapeptide repeat {ECO:0000313|EMBL:ABE37284.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_expt_500_bf_scaffold_1903_9
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4952..5845)
DNA (894bp) protein (298aa)
palmitoyl-CoA hydrolase (EC:3.1.2.2); K10805 acyl-CoA thioesterase II [EC:3.1.2.-]
acyl-CoA thioesterase n=1 Tax=Sphingomonas elodea RepID=UPI00026306F0 rbh
Acyl-CoA thioesterase {ECO:0000313|EMBL:AJP71898.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_1903_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5963..7018)
DNA (1056bp) protein (352aa)
acyl-CoA dehydrogenase n=1 Tax=Sphingomonas melonis RepID=UPI0003711850
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:AJP74387.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
acyl-CoA dehydrogenase-like protein
SCNpilot_expt_500_bf_scaffold_1903_11
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7127..8284)
DNA (1158bp) protein (386aa)
acyl-CoA dehydrogenase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003770167
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:AJP71897.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
acyl-CoA dehydrogenase
SCNpilot_expt_500_bf_scaffold_1903_12
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8420..10447)
DNA (2028bp) protein (676aa)
3-hydroxyacyl-CoA dehydrogenase; K07516 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Sphingomonas elodea RepID=UPI00026306ED rbh
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:AJP71896.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_1903_13
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10580..11803)
DNA (1224bp) protein (408aa)
beta-lactamase n=1 Tax=Sphingomonas elodea RepID=UPI00026306EC rbh
Beta-lactamase {ECO:0000313|EMBL:AJP71895.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
beta-lactamase
SCNpilot_expt_500_bf_scaffold_1903_14
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11976..13724
DNA (1749bp) protein (583aa)
fatty acid--CoA ligase n=1 Tax=Sphingomonas elodea RepID=UPI00026306EB rbh
Fatty acid--CoA ligase {ECO:0000313|EMBL:AJP71894.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
long-chain-fatty-acid--CoA ligase
SCNpilot_expt_500_bf_scaffold_1903_15
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13789..14925
DNA (1137bp) protein (379aa)
aromatic amino acid beta-eliminating lyase/threonine aldolase; K01620 threonine aldolase [EC:4.1.2.5] rbh
Threonine aldolase n=1 Tax=Caulobacter sp. AP07 RepID=J2PPW3_9CAUL rbh
Threonine aldolase {ECO:0000313|EMBL:EJL29672.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
SCNpilot_expt_500_bf_scaffold_1903_16
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14951..16447)
DNA (1497bp) protein (499aa)
carbohydrate kinase; K00864 glycerol kinase [EC:2.7.1.30]
glycerol kinase n=1 Tax=Sphingomonas elodea RepID=UPI00026306E8 rbh
Glycerol kinase {ECO:0000313|EMBL:GAO39327.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
SCNpilot_expt_500_bf_scaffold_1903_17
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16797..17720
DNA (924bp) protein (308aa)
permease n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00037F1308 rbh
Permease {ECO:0000313|EMBL:AJP71893.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
putative permease
SCNpilot_expt_500_bf_scaffold_1903_18
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17957..18184)
DNA (228bp) protein (76aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F90F69
Uncharacterized protein {ECO:0000313|EMBL:AJP71892.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1903_19
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18166..18459)
DNA (294bp) protein (98aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279, ECO:0000313|EMBL:AJP71891.1}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
5-formyltetrahydrofolate cyclo-ligase; K01934 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Sphingomonas elodea RepID=UPI000263057D
SCNpilot_expt_500_bf_scaffold_1903_20
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18956..19258)
DNA (303bp) protein (101aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00031F0952
Cell division protein ZapA {ECO:0000256|SAAS:SAAS00072473}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein; K09888 cell division protein ZapA
SCNpilot_expt_500_bf_scaffold_1903_21
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19258..19443)
DNA (186bp) protein (62aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000306FCC7
Uncharacterized protein {ECO:0000313|EMBL:AJP71889.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_1903_22
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19591..21606
DNA (2016bp) protein (672aa)
Transketolase {ECO:0000313|EMBL:AJP71888.1}; EC=2.2.1.1 {ECO:0000313|EMBL:AJP71888.1};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
transketolase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00037CEE5D rbh
transketolase
SCNpilot_expt_500_bf_scaffold_1903_23
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21821..22552
DNA (732bp) protein (244aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000313|EMBL:AJP71887.1}; EC=1.2.1.12 {ECO:0000313|EMBL:AJP71887.1};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00031FFF74
glyceraldehyde-3-phosphate dehydrogenase
SCNpilot_expt_500_bf_scaffold_1903_24
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22671..23888
DNA (1218bp) protein (406aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
pgk; phosphoglycerate kinase (EC:2.7.2.3) rbh
phosphoglycerate kinase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E2276D rbh
SCNpilot_expt_500_bf_scaffold_1903_25
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23981..24502)
DNA (522bp) protein (174aa)
thiol:disulfide interchange protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B73A41
Thiol:disulfide interchange protein {ECO:0000313|EMBL:ETI63437.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr/modif
SCNpilot_expt_500_bf_scaffold_1903_26
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24683..25597
DNA (915bp) protein (305aa)
fructose-bisphosphate aldolase (EC:4.1.2.13) rbh
fructose-bisphosphate aldolase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000310F6A0 rbh
Fructose-bisphosphate aldolase {ECO:0000313|EMBL:AJP71884.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_1903_27
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26434..26880
DNA (447bp) protein (149aa)
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; EC=2.5.1.3 {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphing
thiamine-phosphate pyrophosphorylase; K00788 thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
Thiamine-phosphate synthase n=1 Tax=Sphingomonas sp. S17 RepID=F3WUP6_9SPHN
SCNpilot_expt_500_bf_scaffold_1903_28
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26885..27064
DNA (180bp) protein (60aa)
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; EC=2.5.1.3 {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphing
thiamine-phosphate pyrophosphorylase; K00788 thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
thiamine-phosphate pyrophosphorylase n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI0002894AC3
SCNpilot_expt_500_bf_scaffold_1903_29
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27161..28168
DNA (1008bp) protein (336aa)
peptidoglycan-binding protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003614B79 rbh
ErfK/YbiS/YcfS/YnhG {ECO:0000313|EMBL:AJP71882.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
ErfK/YbiS/YcfS/YnhG family protein rbh
SCNpilot_expt_500_bf_scaffold_1903_30
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28174..28743
DNA (570bp) protein (190aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003166176
Uncharacterized protein {ECO:0000313|EMBL:AJP71881.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
peptidase M23B
Displaying items 1-30 of 31 in total

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