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SCNpilot_expt_500_bf_scaffold_3078

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3078_1
unknown

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1..186
DNA (186bp) protein (62aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3078_2
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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186..1643
DNA (1458bp) protein (486aa)
Outer membrane protein oprM n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8H409_CAUCN rbh
efflux system protein rbh
Efflux system protein {ECO:0000313|EMBL:AAK25157.1}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus (strain ATCC 19089 / CB15).;"
SCNpilot_expt_500_bf_scaffold_3078_3
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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1646..2713
DNA (1068bp) protein (356aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SUR0_CAUSK
RND family efflux transporter MFP subunit
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ABZ69938.1}; Flags: Precursor;; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_expt_500_bf_scaffold_3078_4
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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2710..5538
DNA (2829bp) protein (943aa)
Cation/multidrug efflux pump acrB n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8H411_CAUCN
acrB; cation/multidrug efflux pump AcrB
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
SCNpilot_expt_500_bf_scaffold_3078_5
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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5523..5726
DNA (204bp) protein (68aa)
Cation/multidrug efflux pump n=1 Tax=Caulobacter crescentus OR37 RepID=R0E7J1_CAUCE
Cation/multidrug efflux pump {ECO:0000313|EMBL:ENZ78099.1}; Flags: Precursor;; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
acriflavin resistance protein
SCNpilot_expt_500_bf_scaffold_3078_6
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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5807..6874
DNA (1068bp) protein (356aa)
Uncharacterized protein n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GD70_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CCH51844.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
saccharopine dehydrogenase
SCNpilot_expt_500_bf_scaffold_3078_7
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6981..7742)
DNA (762bp) protein (254aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI000371E383
Copper homeostasis protein CutC {ECO:0000313|EMBL:GAL99684.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
CutC; K06201 copper homeostasis protein
SCNpilot_expt_500_bf_scaffold_3078_8
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7786..9528)
DNA (1743bp) protein (581aa)
F5-8 type C domain protein; K01206 alpha-L-fucosidase [EC:3.2.1.51] rbh
alpha-L-fucosidase n=1 Tax=Sphingomonas echinoides RepID=UPI00026C9C6A rbh
F5/8 type C domain protein {ECO:0000313|EMBL:EZP57220.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
SCNpilot_expt_500_bf_scaffold_3078_9
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9530..10660)
DNA (1131bp) protein (377aa)
alpha-1,2-mannosidase n=1 Tax=Sphingomonas elodea RepID=UPI0002630DE0
DNA, contig: SP650 {ECO:0000313|EMBL:GAN15103.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
alpha-1,2-mannosidase
SCNpilot_expt_500_bf_scaffold_3078_10
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10599..11960)
DNA (1362bp) protein (454aa)
alpha-1,2-mannosidase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B56B3B
Alpha-mannosidase {ECO:0000313|EMBL:AIT06045.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
alpha-1,2-mannosidase
SCNpilot_expt_500_bf_scaffold_3078_11
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11957..13369)
DNA (1413bp) protein (471aa)
twin-arginine translocation pathway signal protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC0E0
Tat pathway signal protein {ECO:0000313|EMBL:AIT08038.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
twin-arginine translocation pathway signal protein; K09704 hypothetical protein
SCNpilot_expt_500_bf_scaffold_3078_12
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13366..15849)
DNA (2484bp) protein (828aa)
beta-glucosidase (EC:3.2.1.21); K01188 beta-glucosidase [EC:3.2.1.21]
glycoside hydrolase family 3 n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B401A0 rbh
Uncharacterized protein {ECO:0000313|EMBL:EZP57223.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
SCNpilot_expt_500_bf_scaffold_3078_13
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15846..17783)
DNA (1938bp) protein (646aa)
beta-mannosidase (EC:3.2.1.25); K01192 beta-mannosidase [EC:3.2.1.25]
beta-mannosidase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC0E3 rbh
Beta-mannosidase {ECO:0000313|EMBL:KHA65350.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
SCNpilot_expt_500_bf_scaffold_3078_14

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comp(18381..19868)
DNA (1488bp) protein (496aa)
beta-N-acetylhexosaminidase (EC:3.2.1.52); K12373 hexosaminidase [EC:3.2.1.52]
beta-hexosaminidase n=1 Tax=Sphingomonas elodea RepID=UPI0002630DE4 rbh
Glycosyl hydrolase family 20, catalytic domain {ECO:0000313|EMBL:AGU11377.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
SCNpilot_expt_500_bf_scaffold_3078_15
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19837..20649)
DNA (813bp) protein (271aa)
Beta-N-acetylhexosaminidase {ECO:0000313|EMBL:EZP57225.1}; EC=3.2.1.52 {ECO:0000313|EMBL:EZP57225.1};; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
beta-N-acetylhexosaminidase (EC:3.2.1.52); K12373 hexosaminidase [EC:3.2.1.52]
beta-hexosaminidase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002DECC97
SCNpilot_expt_500_bf_scaffold_3078_16
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(20830..23571)
DNA (2742bp) protein (914aa)
TonB-denpendent receptor n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000379134C rbh
TonB-dependent receptor rbh
TonB-dependent receptor {ECO:0000313|EMBL:ABD26846.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_500_bf_scaffold_3078_17
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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23975..24781
DNA (807bp) protein (269aa)
GntR family transcriptional regulator n=2 Tax=Sphingomonas melonis RepID=UPI00035F9EEC
Sphingomonas taxi strain 30a NODE_2, whole genome shotgun sequence {ECO:0000313|EMBL:KIU28742.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
GntR family transcriptional regulator; K03710 GntR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_3078_18
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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24848..25822
DNA (975bp) protein (325aa)
glutamine--fructose-6-phosphate transaminase (isomerizing) (EC:2.6.1.16); K00820 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [EC:2.6.1.16]
hypothetical protein n=2 Tax=Sphingomonas melonis RepID=UPI0003681872 rbh
Iron dicitrate transport regulator FecR {ECO:0000313|EMBL:AIT08036.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_expt_500_bf_scaffold_3078_19
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25819..26955
DNA (1137bp) protein (379aa)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
N-acetylglucosamine 6-phosphate deacetylase (EC:3.5.1.25); K01443 N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] rbh
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037E489E rbh
SCNpilot_expt_500_bf_scaffold_3078_20
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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26952..29798
DNA (2847bp) protein (949aa)
beta-galactosidase (EC:3.2.1.23); K01190 beta-galactosidase [EC:3.2.1.23] rbh
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000379D4A3 rbh
Sphingomonas taxi strain 30a NODE_2, whole genome shotgun sequence {ECO:0000313|EMBL:KIU28779.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_expt_500_bf_scaffold_3078_21
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30639..32201
DNA (1563bp) protein (521aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000313|EMBL:EZP57232.1}; EC=2.7.3.9 {ECO:0000313|EMBL:EZP57232.1};; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000371EF92
phosphoenolpyruvate-protein phosphotransferase
SCNpilot_expt_500_bf_scaffold_3078_22
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32198..33307
DNA (1110bp) protein (370aa)
PTS system subunit IIBC; K02803 PTS system, N-acetylglucosamine-specific IIB component [EC:2.7.1.69]; K02804 PTS system, N-acetylglucosamine-specific IIC component
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037459C4
Sphingomonas taxi strain 30a NODE_2, whole genome shotgun sequence {ECO:0000313|EMBL:KIU28740.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_expt_500_bf_scaffold_3078_23
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33349..33840
DNA (492bp) protein (164aa)
PTS system, N-acetylglucosamine-specific IIBC subunit; K02803 PTS system, N-acetylglucosamine-specific IIB component [EC:2.7.1.69]; K02804 PTS system, N-acetylglucosamine-specific IIC component
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037459C4
Sphingomonas taxi strain 30a NODE_2, whole genome shotgun sequence {ECO:0000313|EMBL:KIU28740.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_expt_500_bf_scaffold_3078_24

Not on your lists

34009..34779
DNA (771bp) protein (257aa)
IclR family transcriptional regulator n=1 Tax=Sphingomonas elodea RepID=UPI0002631E62 rbh
Bacterial transcriptional regulator {ECO:0000313|EMBL:AGU10055.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
IclR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_3078_25
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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35082..36377
DNA (1296bp) protein (432aa)
Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase (Fragment) n=1 Tax=Caulobacter sp. AP07 RepID=J2H037_9CAUL rbh
Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase {ECO:0000313|EMBL:EJL28583.1}; Flags: Fragment;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
putative mandelate racemase/muconate-lactonizing protein rbh
SCNpilot_expt_500_bf_scaffold_3078_26
unknown

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36687..37646
DNA (960bp) protein (320aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3078_27
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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37610..38893
DNA (1284bp) protein (428aa)
L-fucose:H+ symporter permease n=1 Tax=Caulobacter sp. AP07 RepID=J3AUG6_9CAUL rbh
L-fucose:H+ symporter permease {ECO:0000313|EMBL:EJL38151.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
L-fucose permease; K02429 MFS transporter, FHS family, L-fucose permease rbh
SCNpilot_expt_500_bf_scaffold_3078_28
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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38890..40233
DNA (1344bp) protein (448aa)
Putative oxidoreductase, aryl-alcohol dehydrogenase like protein n=1 Tax=Caulobacter sp. AP07 RepID=J2HQM9_9CAUL rbh
Putative oxidoreductase, aryl-alcohol dehydrogenase like protein {ECO:0000313|EMBL:EJL38153.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
aldo/keto reductase rbh
SCNpilot_expt_500_bf_scaffold_3078_29
Rhodobacteraceae bacterium KLH11, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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40234..41058
DNA (825bp) protein (275aa)
Hydrolase n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NVP6_9RHOB
Hydrolase {ECO:0000313|EMBL:EEE35703.1}; TaxID=467661 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.;" source="Rhodobacteraceae bacterium KLH11.;"
putative amidohydrolase; K07046
SCNpilot_expt_500_bf_scaffold_3078_30
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41070..41807
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. AP07 RepID=J2H042_9CAUL rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL28588.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
short-chain dehydrogenase/reductase SDR rbh
Displaying items 1-30 of 47 in total

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