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SCNpilot_expt_500_bf_scaffold_2134

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2134_1
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..1029
DNA (1029bp) protein (343aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
hisC; histidinol-phosphate aminotransferase; K00817 histidinol-phosphate aminotransferase [EC:2.6.1.9]
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036E7E3E
SCNpilot_expt_500_bf_scaffold_2134_2
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1029..1937
DNA (909bp) protein (303aa)
cyclohexadienyl dehydrogenase (EC:1.3.1.12); K00220 cyclohexadieny/prephenate dehydrogenase [EC:1.3.1.43 1.3.1.12] rbh
cyclohexadienyl dehydrogenase n=1 Tax=Sphingomonas elodea RepID=UPI0002630B30 rbh
Putative prephenate dehydrogenase {ECO:0000313|EMBL:GAO40207.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
SCNpilot_expt_500_bf_scaffold_2134_3
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2057..2740)
DNA (684bp) protein (228aa)
glycerol acyltransferase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003196861 rbh
1-acyl-sn-glycerol-3-phosphate acyltransferase {ECO:0000313|EMBL:GAM01448.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
phospholipid/glycerol acyltransferase
SCNpilot_expt_500_bf_scaffold_2134_4
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2740..3270)
DNA (531bp) protein (177aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002630AB3
Uncharacterized protein {ECO:0000313|EMBL:AJP73535.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2134_5
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3267..3788)
DNA (522bp) protein (174aa)
permease n=1 Tax=Sphingomonas echinoides RepID=UPI00026CDB19
Permease {ECO:0000313|EMBL:AJP73534.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
ftsX; cell division protein; K09811 cell division transport system permease protein
SCNpilot_expt_500_bf_scaffold_2134_6
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3785..4093)
DNA (309bp) protein (103aa)
permease n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD038
Permease {ECO:0000313|EMBL:AJP73534.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein; K09811 cell division transport system permease protein
SCNpilot_expt_500_bf_scaffold_2134_7
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4090..4791)
DNA (702bp) protein (234aa)
cell division protein FtsE n=1 Tax=Sphingomonas echinoides RepID=UPI00026CDB1A rbh
Cell division protein FtsE {ECO:0000313|EMBL:AJP73533.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
putative ATPase involved in cell division rbh
SCNpilot_expt_500_bf_scaffold_2134_8
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4949..5698
DNA (750bp) protein (250aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000371420B
Uncharacterized protein {ECO:0000313|EMBL:AJP73532.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2134_9
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5679..7031)
DNA (1353bp) protein (451aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002ECCD0A rbh
Multidrug transporter MATE {ECO:0000313|EMBL:AJP74672.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
MatE family transporter; K03327 multidrug resistance protein, MATE family rbh
SCNpilot_expt_500_bf_scaffold_2134_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7373..8236
DNA (864bp) protein (288aa)
hypothetical protein, partial n=1 Tax=Sphingomonas wittichii RepID=UPI000363A414
Uncharacterized protein {ECO:0000313|EMBL:AJP73531.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
TonB-dependent receptor, plug
SCNpilot_expt_500_bf_scaffold_2134_11
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8215..10299
DNA (2085bp) protein (695aa)
TonB-dependent Receptor Plug domain protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WWM3_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:AJP73531.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
TonB-dependent receptor-like protein rbh
SCNpilot_expt_500_bf_scaffold_2134_12
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10307..11278)
DNA (972bp) protein (324aa)
flagellar motor protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC927 rbh
Flagellar motor protein {ECO:0000313|EMBL:KHA65664.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
OmpA/MotB domain-containing protein
SCNpilot_expt_500_bf_scaffold_2134_13
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11320..12183)
DNA (864bp) protein (288aa)
flagellar motor protein MotA n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC926
Flagellar motor protein MotA {ECO:0000313|EMBL:AJP73527.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
flagellar motor protein MotA
SCNpilot_expt_500_bf_scaffold_2134_14
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12369..13268)
DNA (900bp) protein (300aa)
flagellar hook protein FlgL n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD07C
Uncharacterized protein {ECO:0000313|EMBL:AJP73526.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
flagellar hook-associated protein FlgL; K02397 flagellar hook-associated protein 3 FlgL
SCNpilot_expt_500_bf_scaffold_2134_15
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13275..13736)
DNA (462bp) protein (154aa)
flagellar hook protein FlgK n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC924
Flagellar hook protein FlgK {ECO:0000313|EMBL:AJP73525.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
flagellar hook-associated protein FlgK
SCNpilot_expt_500_bf_scaffold_2134_16
unknown

Not on your lists

14066..14467
DNA (402bp) protein (134aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2134_17
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14562..14921)
DNA (360bp) protein (120aa)
rod binding-like protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD07E
Rod-binding protein {ECO:0000313|EMBL:AJP74671.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
flagellar rod assembly protein/muramidase FlgJ
SCNpilot_expt_500_bf_scaffold_2134_18
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14918..16018)
DNA (1101bp) protein (367aa)
flagellar P-ring protein FlgI n=1 Tax=Sphingomonas melonis RepID=UPI0003700417
Flagellar P-ring protein {ECO:0000256|HAMAP-Rule:MF_00416}; Basal body P-ring protein {ECO:0000256|HAMAP-Rule:MF_00416}; Flags: Precursor;; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
flgI; flagellar basal body P-ring protein rbh
SCNpilot_expt_500_bf_scaffold_2134_19
Ricinus communis, Ricinus, Malpighiales, rosids, Streptophyta, Viridiplantae

Not on your lists

comp(16036..16731)
DNA (696bp) protein (232aa)
Flagellar L-ring protein, putative n=1 Tax=Ricinus communis RepID=B9TJF8_RICCO rbh
Flagellar L-ring protein precursor, putative rbh
Flagellar L-ring protein, putative {ECO:0000313|EMBL:EEF24006.1}; TaxID=3988 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus.;" source="Ricinus communis (Castor bean).;"
SCNpilot_expt_500_bf_scaffold_2134_20
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16741..17529)
DNA (789bp) protein (263aa)
flagellar basal body rod protein FlgG n=1 Tax=Sphingomonas RepID=UPI0002880487
Flagellar basal body rod protein FlgG {ECO:0000313|EMBL:AJP73524.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
flagellar basal-body rod protein FlgG; K02392 flagellar basal-body rod protein FlgG
SCNpilot_expt_500_bf_scaffold_2134_21
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17545..18288)
DNA (744bp) protein (248aa)
flagellar basal-body rod protein FlgF n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC91F rbh
Flagellar basal-body rod protein FlgF {ECO:0000313|EMBL:AJP73523.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
flagellar basal-body rod FlgF; K02391 flagellar basal-body rod protein FlgF
SCNpilot_expt_500_bf_scaffold_2134_22
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18315..19622)
DNA (1308bp) protein (436aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037D53F6
Uncharacterized protein {ECO:0000313|EMBL:AJP73522.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
flagellar basal body FlaE domain-containing protein rbh
SCNpilot_expt_500_bf_scaffold_2134_23
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19650..20357)
DNA (708bp) protein (236aa)
flagellar hook capping protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC91D
Flagellar hook capping protein {ECO:0000313|EMBL:AJP73521.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
flgD; flagellar basal-body rod modification protein FlgD; K02389 flagellar basal-body rod modification protein FlgD
SCNpilot_expt_500_bf_scaffold_2134_24
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20360..20770)
DNA (411bp) protein (137aa)
flagellar basal body rod protein FlgC n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC91C
Flagellar basal-body rod protein FlgC {ECO:0000256|RuleBase:RU362062}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
flagellar basal-body rod protein FlgC; K02388 flagellar basal-body rod protein FlgC
SCNpilot_expt_500_bf_scaffold_2134_25
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20773..21126)
DNA (354bp) protein (118aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003628EFE
Flagellar basal body rod protein FlgB {ECO:0000256|PIRNR:PIRNR002889, ECO:0000313|EMBL:AJP73519.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
flgB; flagellar basal-body rod protein FlgB; K02387 flagellar basal-body rod protein FlgB
SCNpilot_expt_500_bf_scaffold_2134_26
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21343..22005
DNA (663bp) protein (221aa)
MotA/TolQ/ExbB proton channel n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD66B
Biopolymer transporter ExbB {ECO:0000313|EMBL:AJP74668.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
MotA/TolQ/ExbB proton channel; K02556 chemotaxis protein MotA
SCNpilot_expt_500_bf_scaffold_2134_27
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22002..22502
DNA (501bp) protein (167aa)
flagellar motor protein MotB n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC919
Uncharacterized protein {ECO:0000313|EMBL:EZP55488.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
SCNpilot_expt_500_bf_scaffold_2134_28
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22499..23089
DNA (591bp) protein (197aa)
Putative uncharacterized protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X0S0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AJP74667.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2134_29
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23159..23452
DNA (294bp) protein (98aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD66E
Uncharacterized protein {ECO:0000313|EMBL:AJP73518.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
Displaying 29 items

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