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SCNpilot_expt_500_bf_scaffold_2419

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Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2419_1
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..427
DNA (426bp) protein (142aa)
Transcription factor jumonji jmjc domain-containing protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SJ74_9SPHN
transcription factor jumonji jmjc domain-containing protein
Transcription factor jumonji jmjc domain-containing protein {ECO:0000313|EMBL:AGH50637.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_expt_500_bf_scaffold_2419_2
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

451..2418
DNA (1968bp) protein (656aa)
Alpha-glucosidase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S4E1_9SPHN rbh
alpha-glucosidase rbh
Alpha-glucosidase {ECO:0000313|EMBL:AGH50636.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_expt_500_bf_scaffold_2419_3
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2645..3196
DNA (552bp) protein (184aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5); K00995 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D37051
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:AIT06997.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_expt_500_bf_scaffold_2419_4
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3196..3447
DNA (252bp) protein (84aa)
molybdenum cofactor biosynthesis protein MoaD n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030054C6
Molybdopterin synthase sulfur carrier subunit {ECO:0000256|RuleBase:RU362014}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
molybdopterin converting factor subunit 1
SCNpilot_expt_500_bf_scaffold_2419_5
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3444..3866
DNA (423bp) protein (141aa)
moaE; molybdenum cofactor biosynthesis protein E; K03635 molybdopterin synthase catalytic subunit [EC:2.-.-.-]
molybdenum cofactor biosynthesis protein MoaE n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D76EB1
Molybdopterin synthase catalytic subunit {ECO:0000313|EMBL:AJP72655.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_2419_6
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3928..4833)
DNA (906bp) protein (302aa)
LysR family transcriptional regulator n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00031AED5D rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:AJP72652.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
LysR family transcriptional regulator rbh
SCNpilot_expt_500_bf_scaffold_2419_7
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4925..6454)
DNA (1530bp) protein (510aa)
alkyl hydroperoxide reductase F subunit (EC:1.6.99.3); K03387 alkyl hydroperoxide reductase subunit F [EC:1.6.4.-] rbh
Alkyl hydroperoxide reductase subunit F n=1 Tax=Sphingobium baderi LL03 RepID=T0HJL1_9SPHN rbh
Alkyl hydroperoxide reductase subunit F {ECO:0000313|EMBL:EQA99539.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
SCNpilot_expt_500_bf_scaffold_2419_8
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6566..7129)
DNA (564bp) protein (188aa)
peroxiredoxin (EC:1.11.1.15); K03386 peroxiredoxin (alkyl hydroperoxide reductase subunit C) [EC:1.11.1.15] rbh
alkyl hydroperoxide reductase subunit C n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002FC97E7 rbh
Alkyl hydroperoxide reductase {ECO:0000313|EMBL:AIT08195.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_expt_500_bf_scaffold_2419_9
unknown

Not on your lists

comp(7467..7649)
DNA (183bp) protein (61aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2419_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7735..8499)
DNA (765bp) protein (255aa)
membrane protein n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000289BBEC rbh
Membrane protein {ECO:0000313|EMBL:AJP72647.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein; K07090 rbh
SCNpilot_expt_500_bf_scaffold_2419_11
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8654..9343
DNA (690bp) protein (230aa)
Serine acetyltransferase {ECO:0000256|PIRNR:PIRNR000441, ECO:0000313|EMBL:AJP74521.1}; EC=2.3.1.30 {ECO:0000256|PIRNR:PIRNR000441};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
cysE; serine O-acetyltransferase; K00640 serine O-acetyltransferase [EC:2.3.1.30] rbh
serine O-acetyltransferase n=1 Tax=Sphingomonas elodea RepID=UPI00026316A5 rbh
SCNpilot_expt_500_bf_scaffold_2419_12
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9344..9682
DNA (339bp) protein (113aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002DFB240
Uncharacterized protein {ECO:0000313|EMBL:AJP72646.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2419_13
unknown

Not on your lists

9751..10038
DNA (288bp) protein (96aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2419_14
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10158..10586
DNA (429bp) protein (143aa)
Glutathione-dependent formaldehyde-activating, GFA n=1 Tax=alpha proteobacterium JLT2015 RepID=M2TMV1_9PROT
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_expt_500_bf_scaffold_2419_15
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10615..11097)
DNA (483bp) protein (161aa)
AsnC family transcriptional regulator n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003A54E8D
AsnC family transcriptional regulator {ECO:0000313|EMBL:AJR26246.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
AsnC family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_2419_16
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11214..12104
DNA (891bp) protein (297aa)
Threonine transporter RhtB n=1 Tax=Sphingobium sp. HDIP04 RepID=T0GZ51_9SPHN rbh
Transporter {ECO:0000313|EMBL:AJR23554.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
EamA family transporter; K11939 inner membrane transporter RhtA rbh
SCNpilot_expt_500_bf_scaffold_2419_17
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12202..13311)
DNA (1110bp) protein (370aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI00026316A7 rbh
Uncharacterized protein {ECO:0000313|EMBL:AJP72644.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_2419_18
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13410..14303)
DNA (894bp) protein (298aa)
3-oxoacyl-ACP reductase n=1 Tax=Sphingomonas elodea RepID=UPI00026316A8 rbh
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:AJP72641.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_500_bf_scaffold_2419_19
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14423..14800)
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) RepID=E9CF22_CAPO3
Uncharacterized protein {ECO:0000313|EMBL:KHA65622.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2419_20
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14909..15199)
DNA (291bp) protein (97aa)
Putative uncharacterized protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WT86_9SPHN
DNA, contig: SP614 {ECO:0000313|EMBL:GAN12873.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
SCNpilot_expt_500_bf_scaffold_2419_21
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15746..16423)
DNA (678bp) protein (226aa)
chemotaxis protein CheY n=1 Tax=Sphingomonas elodea RepID=UPI00026316A9 rbh
Chemotaxis protein CheY {ECO:0000313|EMBL:AJP72640.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
phoB; phosphate regulon transcriptional regulatory protein PhoB; K07657 two-component system, OmpR family, phosphate regulon response regulator PhoB rbh
SCNpilot_expt_500_bf_scaffold_2419_22
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16458..16697)
DNA (240bp) protein (80aa)
PhoU family transcriptional regulator n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F45A7C
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
phosphate uptake regulator PhoU; K02039 phosphate transport system protein
SCNpilot_expt_500_bf_scaffold_2419_23
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16694..17119)
DNA (426bp) protein (142aa)
PhoU family transcriptional regulator n=1 Tax=Sphingomonas elodea RepID=UPI00026316AA
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
phoU; phosphate transport system regulatory protein; K02039 phosphate transport system protein
SCNpilot_expt_500_bf_scaffold_2419_24
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17129..17923)
DNA (795bp) protein (265aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
phosphate ABC transporter ATPase (EC:3.6.3.27); K02036 phosphate transport system ATP-binding protein [EC:3.6.3.27]
phosphate ABC transporter ATP-binding protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F7B059 rbh
SCNpilot_expt_500_bf_scaffold_2419_25
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17923..18240)
DNA (318bp) protein (106aa)
phosphate ABC transporter permease n=1 Tax=Sphingomonas elodea RepID=UPI00026316AC
Phosphate ABC transporter permease {ECO:0000313|EMBL:AJP72637.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
phosphate ABC transporter permease; K02038 phosphate transport system permease protein
SCNpilot_expt_500_bf_scaffold_2419_26
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18189..19169)
DNA (981bp) protein (327aa)
phosphate ABC transporter permease n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003114054
Phosphate ABC transporter permease {ECO:0000313|EMBL:AJP72637.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
phosphate ABC transporter permease
SCNpilot_expt_500_bf_scaffold_2419_27
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19162..20538)
DNA (1377bp) protein (459aa)
phosphate ABC transporter permease n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D84C31 rbh
Phosphate ABC transporter permease {ECO:0000313|EMBL:AJP72636.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
pstC; phosphate ABC transporter permease; K02037 phosphate transport system permease protein
SCNpilot_expt_500_bf_scaffold_2419_28
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20592..20843)
DNA (252bp) protein (84aa)
phosphate ABC transporter substrate-binding protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CCE34
Phosphate ABC transporter substrate-binding protein {ECO:0000313|EMBL:AJP72635.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
phosphate transport system substrate-binding protein; K02040 phosphate transport system substrate-binding protein
SCNpilot_expt_500_bf_scaffold_2419_29
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21658..22854)
DNA (1197bp) protein (399aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
histidine kinase; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] rbh
ATPase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000314FCF6 rbh
SCNpilot_expt_500_bf_scaffold_2419_30
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22959..23345
DNA (387bp) protein (129aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI00026316B0
Uncharacterized protein {ECO:0000313|EMBL:AJP72633.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
Displaying items 1-30 of 38 in total

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