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SCNpilot_expt_500_bf_scaffold_906

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_906_1
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..541)
DNA (540bp) protein (180aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL12984.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Putative Short-chain dehydrogenase/reductase id=3645210 bin=GWC2_Alphaproteobacteria_42_16 species=Azospirillum brasilense genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
dehydrogenase
SCNpilot_expt_500_bf_scaffold_906_2
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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703..1257
DNA (555bp) protein (185aa)
N6-adenine-specific methylase; K08316 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
Uncharacterized protein n=1 Tax=Proteobacteria bacterium CAG:495 RepID=R5QMG0_9PROT
Uncharacterized protein {ECO:0000313|EMBL:AIL12985.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_bf_scaffold_906_3
unknown

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1348..2373
DNA (1026bp) protein (342aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_906_4
unknown

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2677..3399
DNA (723bp) protein (241aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_906_5
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3411..4163
DNA (753bp) protein (251aa)
Filamentation induced by cAMP protein Fic n=1 Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1ARC2_PELPD
Uncharacterized protein {ECO:0000313|EMBL:AIL13500.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
filamentation induced by cAMP protein fic
SCNpilot_expt_500_bf_scaffold_906_6
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4191..5405)
DNA (1215bp) protein (405aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Queuine tRNA-ribosyltransferase n=1 Tax=uncultured bacterium RepID=K2ELJ8_9BACT rbh
similar to queuine tRNA ribosyltransferase, putative rbh
SCNpilot_expt_500_bf_scaffold_906_7

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comp(5377..6180)
DNA (804bp) protein (268aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DX47_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKE10431.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein; K09125 hypothetical protein
SCNpilot_expt_500_bf_scaffold_906_8
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6216..6503)
DNA (288bp) protein (96aa)
50S ribosomal protein L28 n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RI09_9PROT
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
rpmB; 50S ribosomal protein L28; K02902 large subunit ribosomal protein L28
SCNpilot_expt_500_bf_scaffold_906_9
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6589..8418)
DNA (1830bp) protein (610aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; GFAT {ECO:0000256|HAMAP-Rule:MF_00164}; Glucosamine-6-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00164}; Hexosephosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; L-glutamine--D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; TaxID=244581 species="Bacte
glmS; glucosamine--fructose-6-phosphate aminotransferase (EC:2.6.1.16); K00820 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [EC:2.6.1.16]
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TKD5_9BRAD
SCNpilot_expt_500_bf_scaffold_906_10
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8419..9792)
DNA (1374bp) protein (458aa)
UDP-N-acetylglucosamine pyrophosphorylase (EC:2.3.1.157); K04042 bifunctional UDP-N-acetylglucosamine pyrophosphorylase / Glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
Bifunctional protein GlmU n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZYJ5_STAND
Bifunctional protein GlmU {ECO:0000256|HAMAP-Rule:MF_01631, ECO:0000256|SAAS:SAAS00083647}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_bf_scaffold_906_11
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9959..10516)
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A7K4_PELCD
Uncharacterized protein {ECO:0000313|EMBL:AIL12992.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_906_12
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10828..11607
DNA (780bp) protein (260aa)
Amino acid ABC transporter membrane protein, PAAT family amino acid ABC transporter substrate-binding protein, PAAT family n=1 Tax=Gloeocapsa sp. PCC 7428 RepID=K9XKX1_9CHRO
Uncharacterized protein {ECO:0000313|EMBL:AIL12994.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
amino acid ABC transporter membrane protein, PAAT family ;amino acid ABC transporter substrate-binding protein, PAAT family
SCNpilot_expt_500_bf_scaffold_906_13
Legionella pneumophila, Legionella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12292..12648)
DNA (357bp) protein (119aa)
Uncharacterized protein n=3 Tax=Legionella pneumophila RepID=A5IE44_LEGPC
hypothetical protein
Preprotein translocase SecY {ECO:0000313|EMBL:ADG25579.1}; TaxID=423212 species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.;" source="Legionella pneumophila serogroup 1 (strain 2300/99 Alcoy).;"
SCNpilot_expt_500_bf_scaffold_906_14
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12779..13297
DNA (519bp) protein (173aa)
peptidoglycan-binding domain 1 protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225ABEB
Uncharacterized protein {ECO:0000313|EMBL:AIL12826.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_bf_scaffold_906_15
GWF2_Alphaproteobacteria_58_20_curated, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13359..14705)
DNA (1347bp) protein (449aa)
GTPase HflX n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TZL0_9PROT rbh
putative GTP-binding protein (HflX-like); K03665 GTP-binding protein HflX rbh
Tax=GWF2_Alphaproteobacteria_58_20_curated
SCNpilot_expt_500_bf_scaffold_906_16
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14721..14972)
DNA (252bp) protein (84aa)
RNA-binding protein Hfq n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TLA0_TISMK
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
RNA-binding protein Hfq
SCNpilot_expt_500_bf_scaffold_906_17
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15854..16504)
DNA (651bp) protein (217aa)
D-amino acid aminotransferase; K00824 D-alanine transaminase [EC:2.6.1.21]
Branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase {ECO:0000313|EMBL:ABJ06698.1}; EC=2.6.1.- {ECO:0000313|EMBL:ABJ06698.1};; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
Branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07MY6_RHOP5
SCNpilot_expt_500_bf_scaffold_906_18
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16542..17081)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Rhodospirillum photometricum DSM 122 RepID=H6SRU2_RHOPH
Cytoplasmic protein {ECO:0000313|EMBL:AIL12996.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_906_19
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17184..18056)
DNA (873bp) protein (291aa)
6-phosphofructokinase {ECO:0000313|EMBL:AIL12997.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
6-phosphofructokinase id=2532110 bin=GWC2_Alphaproteobacteria_42_16 species=Microcoleus sp. PCC 7113 genus=Microcoleus taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
phosphofructokinase
Displaying 19 items

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