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SCNpilot_expt_500_bf_scaffold_1973

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1973_1
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..797
DNA (795bp) protein (265aa)
Nucleotide transport protein (Fragment) n=1 Tax=Candidatus Caedibacter acanthamoebae RepID=Q70GF9_9RICK rbh
ATPase AAA {ECO:0000313|EMBL:AIL13243.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
tlcA-A; ADP,ATP carrier protein 1; K03301 ATP:ADP antiporter, AAA family
SCNpilot_expt_500_bf_scaffold_1973_2
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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865..1434
DNA (570bp) protein (190aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL13244.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_bf_scaffold_1973_3
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1466..2797)
DNA (1332bp) protein (444aa)
Abc1 protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TJC2_9PROT rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:AIL13245.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
ABC1 family protein rbh
SCNpilot_expt_500_bf_scaffold_1973_4
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2801..4246)
DNA (1446bp) protein (482aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Pyruvate kinase id=4444533 bin=GWC2_Alphaproteobacteria_42_16 species=Thalassospira xiamenensis genus=Thalassospira taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good + rbh
pykA; pyruvate kinase
SCNpilot_expt_500_bf_scaffold_1973_5
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4248..5165)
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8ANK2_AZOBR
Uncharacterized protein {ECO:0000313|EMBL:AIL13247.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
conserved membrane protein of unknown function
SCNpilot_expt_500_bf_scaffold_1973_6
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5285..5983)
DNA (699bp) protein (233aa)
Uncharacterized protein n=5 Tax=Legionella pneumophila RepID=Q5X184_LEGPA
Uncharacterized protein {ECO:0000313|EMBL:AIL13248.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1973_7
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6055..6672)
DNA (618bp) protein (206aa)
30S ribosomal protein S4 n=3 Tax=Acidiphilium RepID=RS4_ACICJ rbh
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 rbh
SCNpilot_expt_500_bf_scaffold_1973_8
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6800..7582)
DNA (783bp) protein (261aa)
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ {ECO:0000256|RuleBase:RU362024}; EC=2.1.1.200 {ECO:0000256|RuleBase:RU362024};; tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase {ECO:0000256|RuleBase:RU362024}; tRNA Cm32/Um32 methyltransferase {ECO:0000256|RuleBase:RU362024}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
RNA methyltransferase, TrmH family, group 1; K02533 tRNA/rRNA methyltransferase [EC:2.1.1.-]
Putative tRNA (Cytidine/uridine-2'-O-)-methyltransferase n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6EXE7_9PROT
SCNpilot_expt_500_bf_scaffold_1973_9
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7579..8409)
DNA (831bp) protein (277aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
dihydrodipicolinate reductase; K00215 dihydrodipicolinate reductase [EC:1.3.1.26]
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=uncultured Aminicenantes bacterium RepID=Q2YZX9_9BACT
SCNpilot_expt_500_bf_scaffold_1973_10
Erythranthe guttata, Erythranthe, Lamiales, asterids, Streptophyta, Viridiplantae

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comp(8467..9267)
DNA (801bp) protein (267aa)
Uncharacterized protein {ECO:0000313|EMBL:EYU45438.1}; TaxID=4155 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe.;" source="Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus).;"
SCNpilot_expt_500_bf_scaffold_1973_11
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9367..9978)
DNA (612bp) protein (204aa)
putative electron transfer flavoprotein-ubiquinone oxidoreductase; K00311 electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1]
Putative electron transfer flavoprotein-ubiquinone oxidoreductase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZHE0_AZOL4
Electron transfer flavoprotein-ubiquinone oxidoreductase {ECO:0000313|EMBL:AIL13251.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_bf_scaffold_1973_12
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11315..11641)
DNA (327bp) protein (109aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL13252.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_bf_scaffold_1973_13
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11774..12907
DNA (1134bp) protein (378aa)
Uncharacterized protein n=2 Tax=Cyanothece RepID=B7K4R7_CYAP8
Uncharacterized protein {ECO:0000313|EMBL:AIL13253.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1973_14
Thalassospira xiamenensis, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12913..13884)
DNA (972bp) protein (324aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=1123366 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira xiamenensis M-5 = DSM 17429.;"
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Thalassospira xiamenensis M-5 = DSM 17429 RepID=K2LP93_9PROT
ruvB; Holliday junction DNA helicase ruvB
SCNpilot_expt_500_bf_scaffold_1973_15
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13888..14496)
DNA (609bp) protein (203aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
ruvA; Holliday junction resolvasome DNA-binding subunit; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12]
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=uncultured bacterium RepID=K2EGI7_9BACT
SCNpilot_expt_500_bf_scaffold_1973_16
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14493..14687)
DNA (195bp) protein (65aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
crossover junction endodeoxyribonuclease RuvC; K01159 crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI00036A0125
Displaying 16 items

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