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SCNpilot_expt_500_bf_scaffold_3548

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3548_1
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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936..1406
DNA (471bp) protein (157aa)
Transcriptional regulator MraZ {ECO:0000256|HAMAP-Rule:MF_01008, ECO:0000256|SAAS:SAAS00217766}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
COG2001: Uncharacterized protein conserved in bacteria id=3994655 bin=GWC2_Alphaproteobacteria_42_16 species=Magnetospirillum gryphiswaldense genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
cell division protein MraZ; K03925 MraZ protein
SCNpilot_expt_500_bf_scaffold_3548_2
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1410..2396
DNA (987bp) protein (329aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
mraW; S-adenosyl-dependent methyltransferase; K03438 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] rbh
Ribosomal RNA small subunit methyltransferase H n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z8M4_AZOL4 rbh
SCNpilot_expt_500_bf_scaffold_3548_3
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

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2393..2716
DNA (324bp) protein (108aa)
Periplasmic protein TonB n=1 Tax=alpha proteobacterium BAL199 RepID=A8TR35_9PROT
periplasmic protein TonB
Periplasmic protein TonB {ECO:0000313|EMBL:EDP64767.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
SCNpilot_expt_500_bf_scaffold_3548_4
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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2726..4429
DNA (1704bp) protein (568aa)
ftsI; peptidoglycan synthetase FtsI; K03587 cell division protein FtsI (penicillin-binding protein 3) [EC:2.4.1.129] rbh
Peptidoglycan synthetase FtsI n=1 Tax=Oceanibaculum indicum P24 RepID=K2KF61_9PROT rbh
Peptidoglycan synthetase FtsI {ECO:0000313|EMBL:EKE76010.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
SCNpilot_expt_500_bf_scaffold_3548_5
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4438..5904
DNA (1467bp) protein (489aa)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.13 {ECO:0000256|HAMAP-Rule:MF_00208};; Meso-A2pm-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; Meso-diaminopimelate-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208};
UDP-N-acetylmuramyl tripeptide synthetase; K01928 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI00036B1704
SCNpilot_expt_500_bf_scaffold_3548_6
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5901..7328
DNA (1428bp) protein (476aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC:6.3.2.10); K01929 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=2 Tax=Rhodospirillum rubrum RepID=G2TD24_RHORU
SCNpilot_expt_500_bf_scaffold_3548_7
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7331..8419
DNA (1089bp) protein (363aa)
Phospho-N-acetylmuramoyl-pentapeptide-transferase {ECO:0000256|HAMAP-Rule:MF_00038}; EC=2.7.8.13 {ECO:0000256|HAMAP-Rule:MF_00038};; UDP-MurNAc-pentapeptide phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00038}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase (EC:2.7.8.13); K01000 phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] rbh
Phospho-N-acetylmuramoyl-pentapeptide-transferase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TR39_9PROT rbh
SCNpilot_expt_500_bf_scaffold_3548_8
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8421..9803
DNA (1383bp) protein (461aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084542}; EC=6.3.2.9 {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084342};; D-glutamic acid-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00639}; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase {ECO:0000256|HAMAP-Rule:MF_00639}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
UDP-N-acetylmuramoylalanine--D-glutamate ligase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AFM2_AZOBR rbh
murD; UDP-N-acetylmuramoylalanine-D-glutamate ligase rbh
SCNpilot_expt_500_bf_scaffold_3548_9
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9800..10939
DNA (1140bp) protein (380aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2EHE5_9BACT rbh
Cell division protein FtsW {ECO:0000313|EMBL:AIL12696.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
ftsW; cell division protein FtsW rbh
SCNpilot_expt_500_bf_scaffold_3548_10
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11157..12047
DNA (891bp) protein (297aa)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082867}; EC=2.4.1.227 {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082938};; Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase {ECO:0000256|HAMAP-Rule:MF_00033}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase (EC:2.4.1.227); K02563 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=MURG_RHOCS
SCNpilot_expt_500_bf_scaffold_3548_11
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12044..13519
DNA (1476bp) protein (492aa)
UDP-N-acetylmuramate--L-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344}; EC=6.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344};; UDP-N-acetylmuramoyl-L-alanine synthetase {ECO:0000256|HAMAP-Rule:MF_00046}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
murC; UDP-N-acetylmuramate--L-alanine ligase (EC:6.3.2.8); K01924 UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
UDP-N-acetylmuramate--alanine ligase n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B663EA
SCNpilot_expt_500_bf_scaffold_3548_12
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13512..14444
DNA (933bp) protein (311aa)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00041869}; EC=1.3.1.98 {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00057125};; UDP-N-acetylmuramate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00037}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI000362671D rbh
murB; UDP-N-acetylenolpyruvoylglucosamine reductase rbh
SCNpilot_expt_500_bf_scaffold_3548_13
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14441..15367
DNA (927bp) protein (309aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
ddlB; D-alanine--D-alanine ligase (EC:6.3.2.4); K01921 D-alanine-D-alanine ligase [EC:6.3.2.4]
D-alanine--D-alanine ligase n=1 Tax=uncultured bacterium RepID=K2EFW9_9BACT rbh
SCNpilot_expt_500_bf_scaffold_3548_14
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15334..16209
DNA (876bp) protein (292aa)
Cell division protein FtsQ n=1 Tax=Oceanibaculum indicum P24 RepID=K2KF51_9PROT
Cell division protein FtsQ {ECO:0000256|HAMAP-Rule:MF_00911, ECO:0000256|SAAS:SAAS00006985}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
ftsQ; cell division protein FtsQ
SCNpilot_expt_500_bf_scaffold_3548_15
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16217..17491
DNA (1275bp) protein (425aa)
Cell division protein ftsA n=1 Tax=Oceanibaculum indicum P24 RepID=K2K002_9PROT
Cell division protein ftsA {ECO:0000256|PIRNR:PIRNR003101}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
ftsA; cell division protein FtsA; K03590 cell division protein FtsA
SCNpilot_expt_500_bf_scaffold_3548_16
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17567..18199
DNA (633bp) protein (211aa)
Cell division protein FtsZ n=1 Tax=Phaeospirillum fulvum MGU-K5 RepID=S9TL19_PHAFV
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
ftsZ; cell division protein FtsZ
Displaying 16 items

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