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SCNpilot_expt_500_bf_scaffold_2767

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2767_1
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..595
DNA (594bp) protein (198aa)
tRNA nucleotidyltransferase/poly(A) polymerase (EC:2.7.7.19)
poly(A) polymerase n=1 Tax=Rhizobium meliloti RepID=UPI0003659027
Poly(A) polymerase {ECO:0000313|EMBL:KJB92543.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
SCNpilot_expt_500_bf_scaffold_2767_2
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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679..1656
DNA (978bp) protein (326aa)
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase {ECO:0000256|HAMAP-Rule:MF_00388, ECO:0000256|SAAS:SAAS00041388}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_00388, ECO:0000256|SAAS:SAAS00041386};; UDP-3-O-acyl-GlcNAc deacetylase {ECO:0000256|HAMAP-Rule:MF_00388}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; K02535 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase n=1 Tax=uncultured bacterium RepID=K2EHF8_9BACT
SCNpilot_expt_500_bf_scaffold_2767_3
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1822..2613
DNA (792bp) protein (264aa)
ComL family lipoprotein n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B61B28 rbh
Outer membrane protein assembly factor BamD {ECO:0000256|HAMAP-Rule:MF_00922}; Flags: Precursor;; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
comL; lipoprotein; K05807 putative lipoprotein rbh
SCNpilot_expt_500_bf_scaffold_2767_4
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2622..4289
DNA (1668bp) protein (556aa)
DNA repair protein RecN n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IRF3_RHOCS
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
recN; DNA repair protein RecN; K03631 DNA repair protein RecN (Recombination protein N)
SCNpilot_expt_500_bf_scaffold_2767_5
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4286..6376
DNA (2091bp) protein (697aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
NAD-dependent DNA ligase; K01972 DNA ligase (NAD+) [EC:6.5.1.2]
DNA ligase id=3924196 bin=GWC2_Alphaproteobacteria_42_16 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
SCNpilot_expt_500_bf_scaffold_2767_6
RBG_13_Aminicenantes_59_9_curated, Aminicenantes, Bacteria

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6417..7085
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Acinetobacter sp. ANC 3929 RepID=N9LMY2_9GAMM
hypothetical protein
Tax=RBG_13_Aminicenantes_59_9_curated
SCNpilot_expt_500_bf_scaffold_2767_7
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7225..7932
DNA (708bp) protein (236aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL12819.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_bf_scaffold_2767_8
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7959..9902
DNA (1944bp) protein (648aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL12818.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_bf_scaffold_2767_9
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10058..10750)
DNA (693bp) protein (231aa)
4-hydroxybenzoate octaprenyltransferase {ECO:0000256|SAAS:SAAS00188627}; EC=2.5.1.- {ECO:0000256|SAAS:SAAS00188633};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
4-hydroxybenzoate octaprenyltransferase; K03179 4-hydroxybenzoate octaprenyltransferase [EC:2.5.1.-]
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI0003664516
SCNpilot_expt_500_bf_scaffold_2767_10
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10861..11454
DNA (594bp) protein (198aa)
IclR family transcriptional regulator n=1 Tax=Aeromonas hydrophila RepID=UPI0002F0B582
Uncharacterized protein {ECO:0000313|EMBL:AIL12816.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
uracil-DNA glycosylase
SCNpilot_expt_500_bf_scaffold_2767_11
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11507..12130
DNA (624bp) protein (208aa)
Uncharacterized protein n=2 Tax=Bartonella tamiae RepID=J0RHA5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:AIL12815.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein
Displaying 11 items

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