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SCNpilot_expt_500_bf_scaffold_2899

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2899_1
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1380)
DNA (1380bp) protein (460aa)
Secretion pathway protein n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2M8E7_9PROT
Uncharacterized protein {ECO:0000313|EMBL:AIL12709.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
secretion pathway protein
SCNpilot_expt_500_bf_scaffold_2899_2
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1461..1970)
DNA (510bp) protein (170aa)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00151}; Pantetheine-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
coaD; phosphopantetheine adenylyltransferase (EC:2.7.7.3); K00954 pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
Phosphopantetheine adenylyltransferase n=2 Tax=Magnetospirillum gryphiswaldense RepID=V6F146_9PROT
SCNpilot_expt_500_bf_scaffold_2899_3
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(1994..3499)
DNA (1506bp) protein (502aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
DNA gyrase subunit A (EC:5.99.1.3); K02469 DNA gyrase subunit A [EC:5.99.1.3]
DNA gyrase subunit A n=1 Tax=Rhodospirillum photometricum DSM 122 RepID=H6SM15_RHOPH
SCNpilot_expt_500_bf_scaffold_2899_4
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3456..4733)
DNA (1278bp) protein (426aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
gyrA; DNA gyrase subunit A (EC:5.99.1.3); K02469 DNA gyrase subunit A [EC:5.99.1.3]
DNA gyrase subunit A n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6ISP6_RHOCS
Suspect SCG annotation. See neighboring gene [SCNpilot_expt_500_bf_scaffold_2899_3].
SCNpilot_expt_500_bf_scaffold_2899_5
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4768..5253)
DNA (486bp) protein (162aa)
single-stranded DNA-binding protein n=1 Tax=Kiloniella laminariae RepID=UPI0003738D21
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
single-strand DNA binding protein; K03111 single-strand DNA-binding protein
SCNpilot_expt_500_bf_scaffold_2899_6
unknown

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comp(5526..6023)
DNA (498bp) protein (166aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2899_7
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6347..8023)
DNA (1677bp) protein (559aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL12714.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
zipA; putative cell division protein ZipA
SCNpilot_expt_500_bf_scaffold_2899_8
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8186..8479)
DNA (294bp) protein (98aa)
Integration host factor subunit alpha n=1 Tax=alpha proteobacterium IMCC14465 RepID=J9DDX9_9PROT
Integration host factor subunit alpha {ECO:0000313|EMBL:AIL12715.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
ihfA; integration host factor subunit alpha
SCNpilot_expt_500_bf_scaffold_2899_9
Micromonas sp. RCC299, Micromonas, Mamiellales, Mamiellophyceae, Chlorophyta, Viridiplantae

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comp(8840..9556)
DNA (717bp) protein (239aa)
Small GTP-binding protein n=1 Tax=Nostoc sp. PCC 7107 RepID=K9QA93_9NOSO
leucine-rich repeat-containing protein; K06883
Uncharacterized protein {ECO:0000313|EMBL:ACO69887.1}; TaxID=296587 species="Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas.;" source="Micromonas sp. (strain RCC299 / NOUM17) (Picoplanktonic green alga).;"
SCNpilot_expt_500_bf_scaffold_2899_10
unknown

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comp(10053..10439)
DNA (387bp) protein (129aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2899_11
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10492..11694
DNA (1203bp) protein (401aa)
Phage portal protein, HK97 n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225C130
Portal protein {ECO:0000313|EMBL:AIL12718.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
phage portal protein, HK97 family
SCNpilot_expt_500_bf_scaffold_2899_12
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11691..12248
DNA (558bp) protein (186aa)
HK97 family phage prohead protease n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225C131
Uncharacterized protein {ECO:0000313|EMBL:AIL12719.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
HK97 family phage prohead protease; K06904
SCNpilot_expt_500_bf_scaffold_2899_13
Methylomonas methanica, Methylomonas, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12252..13157)
DNA (906bp) protein (302aa)
Extracellular repeat protein, HAF family n=1 Tax=Methylomonas methanica (strain MC09) RepID=G0A3M7_METMM
Extracellular repeat protein, HAF family {ECO:0000313|EMBL:AEG01499.1}; TaxID=857087 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomonas.;" source="Methylomonas methanica (strain MC09).;"
extracellular repeat-containing protein, HAF family
SCNpilot_expt_500_bf_scaffold_2899_14
unknown

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comp(13139..13807)
DNA (669bp) protein (223aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2899_15
unknown

Not on your lists

comp(14301..14606)
DNA (306bp) protein (102aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2899_16
unknown

Not on your lists

comp(15137..15457)
DNA (321bp) protein (107aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2899_17
Chloroherpeton thalassium, Chloroherpeton, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

15732..17945
DNA (2214bp) protein (738aa)
hypothetical protein n=1 Tax=Nocardia sp. BMG111209 RepID=UPI00036E77C2
TPR repeat-containing protein {ECO:0000313|EMBL:ACF12910.1}; TaxID=517418 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chloroherpeton.;" source="Chloroherpeton thalassium (strain ATCC 35110 / GB-78).;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2899_18
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17952..18479)
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Kangiella koreensis (strain DSM 16069 / KCTC 12182 / SW-125) RepID=C7RC03_KANKD
Uncharacterized protein {ECO:0000313|EMBL:AIL12724.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein; K09928 hypothetical protein
SCNpilot_expt_500_bf_scaffold_2899_19
Thermobifida fusca, Thermobifida, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18941..20797
DNA (1857bp) protein (619aa)
Sel1-like repeat-containing serine/threonine protein kinase n=1 Tax=Thermobifida fusca TM51 RepID=R9F718_THEFU
Sel1-like repeat-containing serine/threonine protein kinase
Tyrosine protein kinase:Serine/threonine protein kinase:Sel1-like repeat {ECO:0000313|EMBL:AAZ55693.1}; TaxID=269800 species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Thermobifida.;" source="Thermobifida fusca (strain YX).;"
SCNpilot_expt_500_bf_scaffold_2899_20
unknown

Not on your lists

20802..21161
DNA (360bp) protein (120aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2899_21
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21149..21766
DNA (618bp) protein (206aa)
DNA-3-methyladenine glycosylase I (EC:3.2.2.20); K01246 DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
DNA-3-methyladenine glycosylase I n=1 Tax=Thermoanaerobacterium xylanolyticum (strain ATCC 49914 / DSM 7097 / LX-11) RepID=F6BLF8_THEXL
DNA-3-methyladenine glycosylase {ECO:0000313|EMBL:AIL12726.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_bf_scaffold_2899_22
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21753..23153)
DNA (1401bp) protein (467aa)
Fumarate hydratase class II {ECO:0000256|HAMAP-Rule:MF_00743}; Short=Fumarase C {ECO:0000256|HAMAP-Rule:MF_00743};; EC=4.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00743};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
fumC; Fumarate hydratase; K01679 fumarate hydratase, class II [EC:4.2.1.2] rbh
Fumarate hydratase class II n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z727_AZOL4 rbh
SCNpilot_expt_500_bf_scaffold_2899_23
unknown

Not on your lists

23348..24145
DNA (798bp) protein (266aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2899_24
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24207..24614)
DNA (408bp) protein (136aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL12728.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_bf_scaffold_2899_25
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24736..25188
DNA (453bp) protein (151aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Cytidine/deoxycytidylate deaminase, zinc-binding region n=2 Tax=Magnetospirillum gryphiswaldense RepID=A4TV32_9PROT
zinc-binding CMP/dCMP deaminase
SCNpilot_expt_500_bf_scaffold_2899_26
unknown

Not on your lists

25303..26307
DNA (1005bp) protein (335aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2899_27
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26281..26541)
DNA (261bp) protein (87aa)
Lipoprotein-releasing system ATP-binding protein LolD {ECO:0000256|HAMAP-Rule:MF_01708}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01708};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Lipoprotein releasing system ATP-binding protein lolD n=1 Tax=uncultured bacterium RepID=K2EI37_9BACT
ABC transporter
Displaying 27 items

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