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SCNpilot_expt_500_bf_scaffold_1225

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1225_1
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..525)
DNA (525bp) protein (175aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6EWC6_SPHCR
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEG49820.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_expt_500_bf_scaffold_1225_2
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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646..1662
DNA (1017bp) protein (339aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037CE136
TonB-dependent receptor {ECO:0000313|EMBL:KDA00040.1}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas polymorpha PS728.;"
TonB-dependent receptor plug
SCNpilot_expt_500_bf_scaffold_1225_3
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1662..4013
DNA (2352bp) protein (784aa)
Outer membrane cobalamin receptor protein n=1 Tax=Sphingobium sp. AP49 RepID=J2L0W1_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:KFD26490.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
TonB-dependent receptor
SCNpilot_expt_500_bf_scaffold_1225_4
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4013..6481
DNA (2469bp) protein (823aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CX24_SPHYA rbh
Uncharacterized protein {ECO:0000313|EMBL:EKU76814.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_1225_5
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6478..8268
DNA (1791bp) protein (597aa)
Amidohydrolase, imidazolonepropionase n=1 Tax=Sphingobium sp. AP49 RepID=J2CV27_9SPHN
Amidohydrolase, imidazolonepropionase {ECO:0000313|EMBL:EJK80994.1}; Flags: Precursor;; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
amidohydrolase
SCNpilot_expt_500_bf_scaffold_1225_6
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8295..9917)
DNA (1623bp) protein (541aa)
Acyl-CoA dehydrogenase domain-containing protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TZB5_ALIDB
acyl-CoA dehydrogenase; K14448 (2S)-methylsuccinyl-CoA dehydrogenase
Acyl-CoA dehydrogenase domain-containing protein {ECO:0000313|EMBL:ADV00936.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_500_bf_scaffold_1225_7
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9998..11743)
DNA (1746bp) protein (582aa)
ATP-dependent RNA helicase DeaD {ECO:0000313|EMBL:AKH42641.1}; EC=3.6.4.13 {ECO:0000313|EMBL:AKH42641.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
DEAD/DEAH box helicase-like protein; K05592 ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Putative helicase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y5X2_9SPHN rbh
SCNpilot_expt_500_bf_scaffold_1225_8
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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12053..13732
DNA (1680bp) protein (560aa)
hypothetical protein; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6] rbh
Thiamine pyrophosphate enzyme TPP binding domain protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VEC4_SPHWW rbh
Thiamine pyrophosphate enzyme TPP binding domain protein {ECO:0000313|EMBL:ABQ70640.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_500_bf_scaffold_1225_9
Pandoraea oxalativorans, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(13802..14800)
DNA (999bp) protein (333aa)
Major facilitator superfamily MFS_1 n=1 Tax=Burkholderia sp. (strain CCGE1002) RepID=D5WJK8_BURSC
MFS transporter {ECO:0000313|EMBL:AKC72231.1}; TaxID=573737 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea oxalativorans.;"
major facilitator superfamily protein
Displaying 9 items

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