ggKbase home page

SCNpilot_expt_500_bf_scaffold_1582

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1582_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1895
DNA (1893bp) protein (631aa)
Hopanoid biosynthesis associated RND transporter like protein HpnN n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7I0_9SPHN
Hopanoid-associated RND transporter, hpnN {ECO:0000313|EMBL:GAO55501.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hopanoid biosynthesis associated RND transporter-like protein HpnN
SCNpilot_expt_500_bf_scaffold_1582_2
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1876..2565
DNA (690bp) protein (230aa)
Transcriptional regulator, Crp/Fnr family n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JR86_HYPDA
Crp/Fnr family transcriptional regulator
Transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:ADJ24071.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_500_bf_scaffold_1582_3
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2724..3119
DNA (396bp) protein (132aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI000364FC59
camphor resistance protein CrcB; K06199 CrcB protein
Putative fluoride ion transporter CrcB {ECO:0000255|HAMAP-Rule:MF_00454}; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
SCNpilot_expt_500_bf_scaffold_1582_4
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3121..3939
DNA (819bp) protein (273aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI0003680AA0 rbh
Universal stress protein {ECO:0000313|EMBL:KEZ19906.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1582_5
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4014..4910
DNA (897bp) protein (299aa)
AraC family transcriptional regulator n=1 Tax=Sandarakinorhabdus limnophila RepID=UPI0003B57B67
AraC family transcriptional regulator
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCNpilot_expt_500_bf_scaffold_1582_6
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5039..5335)
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VU60_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJU14185.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1582_7
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5395..6804)
DNA (1410bp) protein (470aa)
gabD; succinate-semialdehyde dehydrogenase; K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16] rbh
Succinate-semialdehyde dehydrogenase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RDM0_PHEZH rbh
Succinate-semialdehyde dehydrogenase {ECO:0000313|EMBL:ACG78410.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_expt_500_bf_scaffold_1582_8
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6849..7595)
DNA (747bp) protein (249aa)
Putative IclR family transcriptional regulator n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YB64_9SPHN
Putative IclR family transcriptional regulator {ECO:0000313|EMBL:GAD50701.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
IclR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_1582_9
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

comp(7680..8861)
DNA (1182bp) protein (394aa)
Putative aromatic amino acid aminotransferase n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I3T7_CALAS
putative aromatic amino acid aminotransferase
Putative aromatic amino acid aminotransferase {ECO:0000313|EMBL:BAL99924.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
SCNpilot_expt_500_bf_scaffold_1582_10
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8959..9612)
DNA (654bp) protein (218aa)
glutathione S-transferase; K00799 glutathione S-transferase [EC:2.5.1.18]
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0IPH3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB30725.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
SCNpilot_expt_500_bf_scaffold_1582_11
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9656..11065)
DNA (1410bp) protein (470aa)
Aldehyde dehydrogenase family protein n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P171_AROAE rbh
aldehyde dehydrogenase rbh
Aldehyde dehydrogenase family protein {ECO:0000313|EMBL:CAI08943.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
SCNpilot_expt_500_bf_scaffold_1582_12
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11086..11844)
DNA (759bp) protein (253aa)
2-dehydro-3-deoxyglucarate aldolase (EC:4.1.2.20) rbh
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase n=1 Tax=Caulobacter sp. AP07 RepID=J3AEN9_9CAUL rbh
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase {ECO:0000313|EMBL:EJL30776.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
SCNpilot_expt_500_bf_scaffold_1582_13
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11841..12647)
DNA (807bp) protein (269aa)
2-oxo-hepta-3-ene-1,7-dioic acid hydratase (EC:4.1.1.77); K02509 2-oxo-hept-3-ene-1,7-dioate hydratase [EC:4.2.1.-] rbh
2-oxo-hepta-3-ene-1,7-dioic acid hydratase {ECO:0000313|EMBL:ABQ70653.1}; EC=4.1.1.77 {ECO:0000313|EMBL:ABQ70653.1};; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
2-oxo-hept-3-ene-1,7-dioate hydratase n=1 Tax=Sphingomonas wittichii RepID=UPI0003628343 rbh
SCNpilot_expt_500_bf_scaffold_1582_14
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12655..13044)
DNA (390bp) protein (130aa)
5-carboxymethyl-2-hydroxymuconate isomerase; K01826 5-carboxymethyl-2-hydroxymuconate isomerase [EC:5.3.3.10]
5-carboxymethyl-2-hydroxymuconate isomerase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VED6_SPHWW
5-carboxymethyl-2-hydroxymuconate isomerase {ECO:0000313|EMBL:ABQ70652.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_500_bf_scaffold_1582_15
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13044..13862)
DNA (819bp) protein (273aa)
extradiol ring-cleavage dioxygenase III subunit B; K05713 2,3-dihydroxyphenylpropionate 1,2-dioxygenase [EC:1.13.11.16] rbh
Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VED5_SPHWW rbh
Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B {ECO:0000313|EMBL:ABQ70651.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_500_bf_scaffold_1582_16
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13859..14185)
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VED4_SPHWW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ70650.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_500_bf_scaffold_1582_17
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14182..14934)
DNA (753bp) protein (251aa)
4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase subunit HpaG2 (EC:4.1.1.68); K05921 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [EC:4.1.1.68 5.3.3.-] rbh
4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase,HpaG2 subunit {ECO:0000313|EMBL:ABQ70649.1}; EC=4.1.1.68 {ECO:0000313|EMBL:ABQ70649.1};; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
5-carboxymethyl-2-hydroxymuconate isomerase n=1 Tax=Sphingomonas wittichii RepID=UPI000317E644 rbh
SCNpilot_expt_500_bf_scaffold_1582_18
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14931..15536)
DNA (606bp) protein (202aa)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase (EC:4.1.1.68); K05921 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [EC:4.1.1.68 5.3.3.-]
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase n=1 Tax=Caulobacter sp. AP07 RepID=J2GKU3_9CAUL
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase {ECO:0000313|EMBL:EJL30770.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
SCNpilot_expt_500_bf_scaffold_1582_19
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15663..17207
DNA (1545bp) protein (515aa)
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; K00151 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase [EC:1.2.1.60] rbh
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VEC9_SPHWW rbh
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase {ECO:0000313|EMBL:ABQ70645.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_500_bf_scaffold_1582_20
unknown

Not on your lists

comp(17099..17437)
DNA (339bp) protein (113aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1582_21
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17763..19658
DNA (1896bp) protein (632aa)
Major facilitator superfamily MFS_1 n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VEC5_SPHWW rbh
major facilitator transporter rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABQ70641.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_500_bf_scaffold_1582_22
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19835..22114
DNA (2280bp) protein (760aa)
TonB-dependent receptor n=2 Tax=Sphingomonas wittichii RepID=A5VEC6_SPHWW rbh
TonB-dependent receptor rbh
TonB-dependent receptor {ECO:0000313|EMBL:ABQ70642.1}; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_500_bf_scaffold_1582_23
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22247..22930
DNA (684bp) protein (228aa)
3-oxoacyl-ACP reductase n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI000287D679
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:AIT06818.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_500_bf_scaffold_1582_24
unknown

Not on your lists

24115..24270
DNA (156bp) protein (52aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1582_25
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24274..25140)
DNA (867bp) protein (289aa)
phhA; phenylalanine 4-monooxygenase; K00500 phenylalanine-4-hydroxylase [EC:1.14.16.1]
phenylalanine-4-hydroxylase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CCF39 rbh
Sphingomonas taxi strain 30a NODE_73, whole genome shotgun sequence {ECO:0000313|EMBL:KIU27243.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_expt_500_bf_scaffold_1582_26
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25215..25643)
DNA (429bp) protein (143aa)
peroxiredoxin n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B7A800
Peroxiredoxin OsmC {ECO:0000313|EMBL:KHA62965.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
OsmC-like protein; K04063 osmotically inducible protein OsmC
SCNpilot_expt_500_bf_scaffold_1582_27
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25718..26026)
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037C8D83
Uncharacterized protein {ECO:0000313|EMBL:GAM00145.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
17 kDa surface antigen
SCNpilot_expt_500_bf_scaffold_1582_28
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26885..27508
DNA (624bp) protein (208aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B6DAAD rbh
Sphingomonas taxi strain 30a NODE_25, whole genome shotgun sequence {ECO:0000313|EMBL:KIU28119.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1582_29
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27519..27965)
DNA (447bp) protein (149aa)
acetyltransferase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B53C9E
Acetyltransferase {ECO:0000313|EMBL:AJP73804.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
sortase-like acyltransferase
SCNpilot_expt_500_bf_scaffold_1582_30
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28510..29121)
DNA (612bp) protein (204aa)
peptidase M22 n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B43BE2
Peptidase M22 {ECO:0000313|EMBL:AIT06287.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
peptidase M22, glycoprotease
Displaying items 1-30 of 36 in total

View Taxonomy