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SCNpilot_expt_500_bf_scaffold_1815

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1815_1
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..179
DNA (177bp) protein (59aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC918
Uncharacterized protein {ECO:0000313|EMBL:AIT07069.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_expt_500_bf_scaffold_1815_2
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

276..578
DNA (303bp) protein (101aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B4364B
Anti-sigma-28 factor, FlgM family protein {ECO:0000313|EMBL:EZP55486.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
SCNpilot_expt_500_bf_scaffold_1815_3
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

565..879
DNA (315bp) protein (105aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036E6698
Uncharacterized protein {ECO:0000313|EMBL:GAM01145.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
SCNpilot_expt_500_bf_scaffold_1815_4
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

969..1823
DNA (855bp) protein (285aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003775D66 rbh
Flagellar protein FlgJ {ECO:0000313|EMBL:AIT07071.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1815_5
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1830..3842
DNA (2013bp) protein (671aa)
flagellar biosynthesis protein FlhA n=1 Tax=Sphingomonas melonis RepID=UPI000360C374 rbh
Sphingomonas taxi strain 30a NODE_39, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26816.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
flhA; flagellar biosynthesis protein FlhA
SCNpilot_expt_500_bf_scaffold_1815_6
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3924..4553
DNA (630bp) protein (210aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037BFD4C
RNA polymerase sigma70 {ECO:0000313|EMBL:AJP73515.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
RNA polymerase sigma 28 subunit FliA/WhiG
SCNpilot_expt_500_bf_scaffold_1815_7
Erythrobacter sp. SD-21, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4748..5515)
DNA (768bp) protein (256aa)
flagellin n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD0CD4 rbh
Flagellin-like protein {ECO:0000313|EMBL:EDL49928.1}; TaxID=161528 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. SD-21.;"
flagellin; K02406 flagellin
SCNpilot_expt_500_bf_scaffold_1815_8
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6089..7000
DNA (912bp) protein (304aa)
Fis family transcriptional regulator n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B55D15
Sigma-54 interaction domain protein {ECO:0000313|EMBL:EZP50944.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
two component system, response regulator FlrC; K10943 two component system, response regulator FlrC
SCNpilot_expt_500_bf_scaffold_1815_9
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6997..7359
DNA (363bp) protein (121aa)
flagellar hook-basal body protein FliE n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B700E0
Flagellar hook-basal body complex protein FliE {ECO:0000256|HAMAP-Rule:MF_00724, ECO:0000256|SAAS:SAAS00116622}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
flagellar hook-basal body complex subunit FliE; K02408 flagellar hook-basal body complex protein FliE
SCNpilot_expt_500_bf_scaffold_1815_10
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7363..9081
DNA (1719bp) protein (573aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036FE5F6 rbh
Flagellar M-ring protein {ECO:0000256|PIRNR:PIRNR004862}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
flagellar M-ring protein FliF rbh
SCNpilot_expt_500_bf_scaffold_1815_11
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9078..10109
DNA (1032bp) protein (344aa)
flagellar motor switch protein FliG n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CA6B5 rbh
Flagellar motor switch protein FliG {ECO:0000256|PIRNR:PIRNR003161}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
flagellar motor switch protein FliG; K02410 flagellar motor switch protein FliG rbh
SCNpilot_expt_500_bf_scaffold_1815_12
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10102..10857
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003609140
Flagellar biosynthesis protein FliH {ECO:0000313|EMBL:AIT07171.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_expt_500_bf_scaffold_1815_13
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10857..11864
DNA (1008bp) protein (336aa)
FliI/YscN family ATPase (EC:3.6.3.14); K02412 flagellum-specific ATP synthase [EC:3.6.3.14]
flagellar protein FliI n=1 Tax=Sphingomonas echinoides RepID=UPI00026CCEAC
Uncharacterized protein {ECO:0000313|EMBL:EZP50949.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
SCNpilot_expt_500_bf_scaffold_1815_14
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11873..12118
DNA (246bp) protein (82aa)
ATP synthase {ECO:0000313|EMBL:AJP73507.1}; EC=3.6.3.14 {ECO:0000313|EMBL:AJP73507.1};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
flagellar protein export ATPase FliI; K02412 flagellum-specific ATP synthase [EC:3.6.3.14]
flagellar protein FliI n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00035E7F53
SCNpilot_expt_500_bf_scaffold_1815_15
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12111..12530
DNA (420bp) protein (140aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CCEAD
Uncharacterized protein {ECO:0000313|EMBL:KHA64911.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
SCNpilot_expt_500_bf_scaffold_1815_16
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12571..13905
DNA (1335bp) protein (445aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B57E3B
Flagellar hook-length control family protein {ECO:0000313|EMBL:EZP50951.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
flagellar hook-length control protein; K02414 flagellar hook-length control protein FliK
SCNpilot_expt_500_bf_scaffold_1815_17
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13923..14558
DNA (636bp) protein (212aa)
Flagellar basal body-associated FliL family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X0T7_9SPHN
FliL protein {ECO:0000313|EMBL:GAN13620.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
flagellar basal body-associated protein FliL
SCNpilot_expt_500_bf_scaffold_1815_18
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14565..15503
DNA (939bp) protein (313aa)
flagellar motor switch protein FliM n=1 Tax=Sphingomonas echinoides RepID=UPI00026CCEB0 rbh
Flagellar motor switch protein FliM {ECO:0000313|EMBL:KHA64915.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
flagellar motor switch protein FliM; K02416 flagellar motor switch protein FliM
SCNpilot_expt_500_bf_scaffold_1815_19
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15500..15802
DNA (303bp) protein (101aa)
flagellar motor switch protein FliN n=1 Tax=Sphingomonas melonis RepID=UPI00037B1F6A
FliN protein {ECO:0000313|EMBL:GAN13622.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
fliN; flagellar motor switch protein FliN; K02417 flagellar motor switch protein FliN/FliY
SCNpilot_expt_500_bf_scaffold_1815_20
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15810..16079
DNA (270bp) protein (90aa)
flagellar biosynthesis protein FliO n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B423F9
Flagellar biogenesis protein {ECO:0000313|EMBL:AIT07178.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
flagellar biogenesis protein FliO
SCNpilot_expt_500_bf_scaffold_1815_21
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16076..16966
DNA (891bp) protein (297aa)
flagellar biosynthesis protein FliP n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00035FF18E rbh
FliP protein {ECO:0000313|EMBL:GAN13624.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
fliP; flagellar biosynthetic protein FliP; K02419 flagellar biosynthetic protein FliP rbh
SCNpilot_expt_500_bf_scaffold_1815_22
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16974..17246
DNA (273bp) protein (91aa)
flagellar biosynthesis protein FliQ n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000369030A
FliQ protein {ECO:0000313|EMBL:GAN13625.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
flagellar biosynthetic protein FliQ
SCNpilot_expt_500_bf_scaffold_1815_23
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17250..18023
DNA (774bp) protein (258aa)
flagellar biosynthesis protein FliR n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003683347 rbh
Flagellar biosynthetic protein fliR {ECO:0000256|RuleBase:RU003842}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
flagellar biosynthetic protein FliR; K02421 flagellar biosynthetic protein FliR
SCNpilot_expt_500_bf_scaffold_1815_24
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18023..19153
DNA (1131bp) protein (377aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003751F5D rbh
Flagellar biosynthesis protein FlhB {ECO:0000313|EMBL:KHA64921.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
flhB; flagellar biosynthesis protein FlhB
SCNpilot_expt_500_bf_scaffold_1815_25
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19188..20729
DNA (1542bp) protein (514aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037C7347 rbh
Uncharacterized protein {ECO:0000313|EMBL:KHA64922.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
flagellar hook-associated 2 domain-containing protein; K02407 flagellar hook-associated protein 2
SCNpilot_expt_500_bf_scaffold_1815_26
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20732..21130
DNA (399bp) protein (133aa)
flagellar biosynthesis protein FliS n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B45115
Flagellar protein FliS {ECO:0000313|EMBL:EZP50961.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
fliS; flagellar protein FliS; K02422 flagellar protein FliS
SCNpilot_expt_500_bf_scaffold_1815_27
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21295..21864
DNA (570bp) protein (190aa)
HNH endonuclease family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WYX7_9SPHN rbh
DNA, contig: SP642 {ECO:0000313|EMBL:GAN14488.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
HNH endonuclease
SCNpilot_expt_500_bf_scaffold_1815_28
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21869..22324)
DNA (456bp) protein (152aa)
5-oxoprolinase {ECO:0000313|EMBL:KDM67308.1}; EC=3.5.2.9 {ECO:0000313|EMBL:KDM67308.1};; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
5-oxoprolinase (EC:3.5.2.9); K01469 5-oxoprolinase (ATP-hydrolysing) [EC:3.5.2.9]
5-oxoprolinase n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0IZV9_ACIMA
SCNpilot_expt_500_bf_scaffold_1815_29
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22321..22947)
DNA (627bp) protein (209aa)
Hydantoinase/oxoprolinase {ECO:0000313|EMBL:EFH12799.1}; EC=3.5.2.9 {ECO:0000313|EMBL:EFH12799.1};; Flags: Fragment;; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
5-oxoprolinase (EC:3.5.2.9); K01469 5-oxoprolinase (ATP-hydrolysing) [EC:3.5.2.9]
Hydantoinase/oxoprolinase (Fragment) n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RIS6_9PROT
Displaying 29 items

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