ggKbase home page

SCNpilot_expt_500_bf_scaffold_1958

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1958_1
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..568)
DNA (567bp) protein (189aa)
NAD-dependent aldehyde dehydrogenase n=1 Tax=Caulobacter crescentus OR37 RepID=R0EQ63_CAUCE
aldehyde dehydrogenase
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_expt_500_bf_scaffold_1958_2

Not on your lists

comp(616..978)
DNA (363bp) protein (121aa)
hypothetical protein n=1 Tax=Nocardia sp. 348MFTsu5.1 RepID=UPI00037356A5
Uncharacterized protein {ECO:0000313|EMBL:KKL16304.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1958_3
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(975..1748)
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000376F6C9 rbh
Short-chain dehydrogenase {ECO:0000313|EMBL:KFD29798.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_500_bf_scaffold_1958_4
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1804..2571)
DNA (768bp) protein (256aa)
Putative short chain dehydrogenase n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N5N7_ERYLH
short chain dehydrogenase
Putative short chain dehydrogenase {ECO:0000313|EMBL:ABC65004.1}; TaxID=314225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis (strain HTCC2594).;"
SCNpilot_expt_500_bf_scaffold_1958_5
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2582..3166)
DNA (585bp) protein (195aa)
alpha/beta hydrolase n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD057F
alpha/beta hydrolase fold protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_expt_500_bf_scaffold_1958_6
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3378..5654)
DNA (2277bp) protein (759aa)
acyl-CoA transferases/carnitine dehydratase n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD0578 rbh
acyl-CoA transferase rbh
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_expt_500_bf_scaffold_1958_7
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5651..6076)
DNA (426bp) protein (142aa)
hypothetical protein n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD0579
Uncharacterized protein {ECO:0000313|EMBL:ENZ83988.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1958_8
gamma proteobacterium BDW918, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6489..6908
DNA (420bp) protein (140aa)
Enoyl-CoA hydratase {ECO:0000313|EMBL:EIF44969.1}; EC=4.2.1.17 {ECO:0000313|EMBL:EIF44969.1};; TaxID=1168065 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium BDW918.;"
enoyl-CoA hydratase; K15866 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18]
Enoyl-CoA hydratase n=1 Tax=gamma proteobacterium BDW918 RepID=I2JPR7_9GAMM
SCNpilot_expt_500_bf_scaffold_1958_9
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7140..7787
DNA (648bp) protein (216aa)
Acyl-CoA dehydrogenase n=1 Tax=Caulobacter crescentus OR37 RepID=R0EQH9_CAUCE
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:ENZ83267.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
acyl-CoA dehydrogenase-like protein
SCNpilot_expt_500_bf_scaffold_1958_10
Cupriavidus pinatubonensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7784..8113
DNA (330bp) protein (110aa)
aminoglycoside phosphotransferase n=1 Tax=Cupriavidus sp. UYPR2.512 RepID=UPI00035C7802
aminoglycoside phosphotransferase
Aminoglycoside phosphotransferase {ECO:0000313|EMBL:AAZ65670.1}; TaxID=264198 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) (Ralstonia; eutropha (strain JMP 134)).;"
SCNpilot_expt_500_bf_scaffold_1958_11
Bordetella hinzii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8104..8439
DNA (336bp) protein (112aa)
aminoglycoside phosphotransferase n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B5ECB9
Phosphotransferase enzyme family protein {ECO:0000313|EMBL:KCB40785.1}; TaxID=1331257 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 5132.;"
aminoglycoside phosphotransferase; K06979
SCNpilot_expt_500_bf_scaffold_1958_12
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8436..8882
DNA (447bp) protein (149aa)
Aminoglycoside phosphotransferase n=1 Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=F8GWT8_CUPNN
aminoglycoside phosphotransferase; K06979
Aminoglycoside phosphotransferase {ECO:0000313|EMBL:AEI81808.1}; TaxID=1042878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) (Ralstonia; eutropha).;"
SCNpilot_expt_500_bf_scaffold_1958_13
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9130..9714
DNA (585bp) protein (195aa)
TetR family transcriptional regulator n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B62B29
TetR family transcriptional regulator
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_expt_500_bf_scaffold_1958_14
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9714..10706
DNA (993bp) protein (331aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CQ17_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:EKU72986.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
alcohol dehydrogenase
SCNpilot_expt_500_bf_scaffold_1958_15
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10876..13311)
DNA (2436bp) protein (812aa)
TonB-dependent receptor n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD0581 rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ83994.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
TonB-dependent receptor rbh
Displaying 15 items

View Taxonomy