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SCNpilot_expt_500_bf_scaffold_6447

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_6447_1
Sphingobium sp. HDIP04, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..500)
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. HDIP04 RepID=T0H2Z4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB06468.1}; TaxID=428994 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. HDIP04.;"
signal transduction histidine kinase
SCNpilot_expt_500_bf_scaffold_6447_2
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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721..984
DNA (264bp) protein (88aa)
UPI0003D032C2 related cluster n=1 Tax=unknown RepID=UPI0003D032C2
Uncharacterized protein {ECO:0000313|EMBL:AJA09659.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_6447_3
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1022..1882
DNA (861bp) protein (287aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037F0ED1 rbh
KR domain protein {ECO:0000313|EMBL:KDD61978.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
short-chain dehydrogenase/reductase rbh
SCNpilot_expt_500_bf_scaffold_6447_4
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1886..2323)
DNA (438bp) protein (146aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILK4_9SPHN
DNA, contig: SP643 {ECO:0000313|EMBL:GAN14573.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_6447_5
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2604..2918
DNA (315bp) protein (105aa)
Uncharacterized protein {ECO:0000313|EMBL:AJA07082.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
SCNpilot_expt_500_bf_scaffold_6447_6
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2915..3514
DNA (600bp) protein (200aa)
2OG-Fe(II) oxygenase n=1 Tax=Sphingobium sp. YL23 RepID=UPI00039A557C
2OG-Fe(II) oxygenase {ECO:0000313|EMBL:KFD30107.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_6447_7
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3525..3983
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037F92B6
Uncharacterized protein {ECO:0000313|EMBL:EQB11358.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
Aha1 domain-containing protein
SCNpilot_expt_500_bf_scaffold_6447_8
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4007..4585)
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00036EBC04
Uncharacterized protein {ECO:0000313|EMBL:AIT06002.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_6447_9
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4615..5121)
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VGH6_SPHWW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ71392.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_500_bf_scaffold_6447_10
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5081..5908)
DNA (828bp) protein (276aa)
exodeoxyribonuclease III Xth; K01142 exodeoxyribonuclease III [EC:3.1.11.2]
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0IPM5_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB13760.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
SCNpilot_expt_500_bf_scaffold_6447_11
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5919..7781)
DNA (1863bp) protein (621aa)
DNA ligase D n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VGH4_SPHWW rbh
DNA ligase D rbh
DNA ligase D {ECO:0000313|EMBL:ABQ71390.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_500_bf_scaffold_6447_12
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7904..8080
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8W190_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KEQ53730.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_6447_13
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8237..9643)
DNA (1407bp) protein (469aa)
Beta-lactamase n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y279_9PROT rbh
Beta-lactamase {ECO:0000313|EMBL:EGY00373.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
Beta-lactamase
SCNpilot_expt_500_bf_scaffold_6447_14
alpha proteobacterium JLT2015, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10033..11208)
DNA (1176bp) protein (392aa)
nylA; amidase (EC:3.5.1.4); K01426 amidase [EC:3.5.1.4]
Putative amidase n=1 Tax=alpha proteobacterium JLT2015 RepID=M2S9I8_9PROT
Putative amidase {ECO:0000313|EMBL:EMD82055.1}; TaxID=1234595 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium JLT2015.;"
SCNpilot_expt_500_bf_scaffold_6447_15
unknown

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comp(11451..12428)
DNA (978bp) protein (326aa)
hypothetical protein n=1 Tax=Amycolatopsis benzoatilytica RepID=UPI0003655D78
Displaying 15 items

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