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SCNpilot_expt_500_bf_scaffold_6506

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_6506_1
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(71..871)
DNA (801bp) protein (267aa)
TonB-dependent receptor n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B74A89
TonB-dependent receptor {ECO:0000313|EMBL:EZP70323.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
TonB-dependent receptor
SCNpilot_expt_500_bf_scaffold_6506_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(868..2805)
DNA (1938bp) protein (646aa)
TonB-dependent receptor n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B74A89
Uncharacterized protein {ECO:0000313|EMBL:GAO54297.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor
SCNpilot_expt_500_bf_scaffold_6506_3
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2930..4879
DNA (1950bp) protein (650aa)
peptidase t2 asparaginase 2; K13051 beta-aspartyl-peptidase (threonine type) [EC:3.4.19.5] rbh
peptidase T n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B40F10 rbh
Peptidase t2 asparaginase 2 {ECO:0000313|EMBL:EZP70324.1}; Flags: Precursor;; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
SCNpilot_expt_500_bf_scaffold_6506_4
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4869..5309
DNA (441bp) protein (147aa)
AsnC family transcriptional regulator n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B5D444
AsnC family transcriptional regulator
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:ABZ70253.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_expt_500_bf_scaffold_6506_5
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5539..5937
DNA (399bp) protein (133aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI0003673275
Cell Wall Hydrolase family protein {ECO:0000313|EMBL:EZP49265.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
SleB-like protein
SCNpilot_expt_500_bf_scaffold_6506_6
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6061..7359)
DNA (1299bp) protein (433aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI0003640C57 rbh
UPF0176 protein Aam_106_015 {ECO:0000256|HAMAP-Rule:MF_00469}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
rhodanese domain-containing protein; K07146 UPF0176 protein
SCNpilot_expt_500_bf_scaffold_6506_7
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8102..10243
DNA (2142bp) protein (714aa)
penicillin amidase n=1 Tax=Sphingomonas elodea RepID=UPI0002631678
Penicillin acylase {ECO:0000313|EMBL:EZP54212.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
penicillin acylase
SCNpilot_expt_500_bf_scaffold_6506_8
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10200..11210)
DNA (1011bp) protein (337aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CA7AA
WalW protein {ECO:0000313|EMBL:KHA63973.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_6506_9
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11216..12853)
DNA (1638bp) protein (546aa)
histidine kinase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CA7AB
Sphingomonas taxi strain 30a NODE_6, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29509.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
histidine kinase rbh
SCNpilot_expt_500_bf_scaffold_6506_10
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13033..13494
DNA (462bp) protein (154aa)
AsnC family transcriptional regulator n=1 Tax=Sphingomonas melonis RepID=UPI0003779D58
ArsR family transcriptional regulator {ECO:0000313|EMBL:AIT05221.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
AsnC family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_6506_11
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13564..14841)
DNA (1278bp) protein (426aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B639C1 rbh
Uncharacterized protein {ECO:0000313|EMBL:GAM01359.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_6506_12
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14994..15686
DNA (693bp) protein (231aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000368AEEF rbh
UPF0246 protein MC45_00855 {ECO:0000256|HAMAP-Rule:MF_00652}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein; K09861 hypothetical protein
SCNpilot_expt_500_bf_scaffold_6506_13
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15683..16339
DNA (657bp) protein (219aa)
short-chain dehydrogenase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B73188 rbh
DNA, contig: SP612 {ECO:0000313|EMBL:GAN12703.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_500_bf_scaffold_6506_14
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16434..16742
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037A2CB2
Uncharacterized protein {ECO:0000313|EMBL:EZP49011.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
SCNpilot_expt_500_bf_scaffold_6506_15
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


16879..19584
DNA (2706bp) protein (902aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
DNA gyrase subunit A (EC:5.99.1.3); K02469 DNA gyrase subunit A [EC:5.99.1.3] rbh
DNA gyrase subunit A n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003157C2D rbh
SCNpilot_expt_500_bf_scaffold_6506_16
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19581..19871
DNA (291bp) protein (97aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000367665A
Sphingomonas taxi strain 30a NODE_6, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29514.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_6506_17
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19780..20316)
DNA (537bp) protein (179aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2II82_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EZP57533.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_6506_18
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20349..21032)
DNA (684bp) protein (228aa)
O-methyltransferase n=1 Tax=Sphingomonas echinoides RepID=UPI00026C9B84
Putative methyltransferase {ECO:0000313|EMBL:GAO38972.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
O-methyltransferase family protein
SCNpilot_expt_500_bf_scaffold_6506_19
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21038..21946)
DNA (909bp) protein (303aa)
fructose-bisphosphate aldolase (EC:4.1.2.13)
Fructose-bisphosphate aldolase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S9T9_9SPHN
Fructose-bisphosphate aldolase {ECO:0000313|EMBL:AHE56380.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
SCNpilot_expt_500_bf_scaffold_6506_20
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22074..22520
DNA (447bp) protein (149aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037A37CC
Sphingomonas taxi strain 30a NODE_52, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29179.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_6506_21
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22486..22953)
DNA (468bp) protein (156aa)
threonine dehydratase (EC:4.3.1.19); K01754 threonine dehydratase [EC:4.3.1.19]
pyridoxal-5''''-phosphate-dependent protein n=1 Tax=Sphingomonas melonis RepID=UPI00037A9DE8
Sphingomonas taxi strain 30a NODE_2, whole genome shotgun sequence {ECO:0000313|EMBL:KIU28677.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_expt_500_bf_scaffold_6506_22
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23571..24803
DNA (1233bp) protein (411aa)
decarboxylase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036919DF rbh
Decarboxylase {ECO:0000313|EMBL:KHA63555.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
Orn/DAP/Arg decarboxylase 2 rbh
SCNpilot_expt_500_bf_scaffold_6506_23
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24911..25990
DNA (1080bp) protein (360aa)
Deoxyhypusine synthase-like protein {ECO:0000256|HAMAP-Rule:MF_00640}; EC=2.5.-.- {ECO:0000256|HAMAP-Rule:MF_00640};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
deoxyhypusine synthase-like protein; K00809 deoxyhypusine synthase [EC:2.5.1.46]
deoxyhypusine synthase n=1 Tax=Sphingomonas elodea RepID=UPI0002630DB9 rbh
SCNpilot_expt_500_bf_scaffold_6506_24
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26102..27484)
DNA (1383bp) protein (461aa)
asnB; asparagine synthase (EC:6.3.5.4); K01953 asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
asparagine synthase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00035D0C21
AsnB protein {ECO:0000313|EMBL:GAN12519.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
Displaying 24 items

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