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SCNpilot_expt_500_bf_scaffold_6616

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_6616_1
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..296)
DNA (294bp) protein (98aa)
chromosome segregation and condensation protein ScpA n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CDC64
Chromosome segregation and condensation protein ScpA {ECO:0000313|EMBL:GAO39442.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
condensin subunit ScpA
SCNpilot_expt_500_bf_scaffold_6616_2
unknown

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comp(278..436)
DNA (159bp) protein (53aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI000374CDD0
SCNpilot_expt_500_bf_scaffold_6616_3
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(530..1087)
DNA (558bp) protein (186aa)
Beta-N-acetylhexosaminidase {ECO:0000256|SAAS:SAAS00114579}; EC=3.2.1.52 {ECO:0000256|SAAS:SAAS00114579};; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
beta-hexosaminidase n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI0002886C0B
hypothetical protein
SCNpilot_expt_500_bf_scaffold_6616_4
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1523..2260)
DNA (738bp) protein (246aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000366F2D1
Sporulation protein {ECO:0000313|EMBL:AIT06510.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_6616_5
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2264..3988)
DNA (1725bp) protein (575aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
argS; arginyl-tRNA synthetase (EC:6.1.1.19); K01887 arginyl-tRNA synthetase [EC:6.1.1.19] rbh
arginyl-tRNA synthetase n=1 Tax=Sphingomonas melonis RepID=UPI00035FCE87 rbh
SCNpilot_expt_500_bf_scaffold_6616_6
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4081..4875)
DNA (795bp) protein (265aa)
LysR family transcriptional regulator n=1 Tax=Sphingomonas elodea RepID=UPI0002630599
LysR family transcriptional regulator {ECO:0000313|EMBL:AJP71019.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
LysR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_6616_7
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4872..5270)
DNA (399bp) protein (133aa)
magnesium transporter ApaG n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CA66C
Protein ApaG {ECO:0000256|HAMAP-Rule:MF_00791, ECO:0000256|SAAS:SAAS00014786}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
apaG; ApaG protein; K06195 ApaG protein
SCNpilot_expt_500_bf_scaffold_6616_8
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5267..5623)
DNA (357bp) protein (119aa)
cystathionine gamma-synthase (EC:2.5.1.48); K01739 cystathionine gamma-synthase [EC:2.5.1.48]
O-succinylhomoserine sulfhydrylase n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI0002890AC9
MetB protein {ECO:0000313|EMBL:GAN14809.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
SCNpilot_expt_500_bf_scaffold_6616_9
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5565..6461)
DNA (897bp) protein (299aa)
O-succinylhomoserine sulfhydrylase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B733D8
Cys/Met metabolism PLP-dependent enzyme family protein {ECO:0000313|EMBL:EZP52946.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
cystathionine gamma-synthase
SCNpilot_expt_500_bf_scaffold_6616_10
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6547..7800
DNA (1254bp) protein (418aa)
dolichyl-phosphate-mannose-protein mannosyltransferase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B63366 rbh
Dolichyl-phosphate-mannose-mannosyltransferase family protein {ECO:0000313|EMBL:EZP52947.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_6616_11
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7808..8557)
DNA (750bp) protein (250aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase n=1 Tax=Sphingomonas melonis RepID=UPI00036DE76C
Displaying 11 items

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